Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0393
         (506 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    28   0.92 
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    26   3.7  
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    26   3.7  
SPAPB1E7.11c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.6  

>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 27.9 bits (59), Expect = 0.92
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = +1

Query: 85  RLYNNLEPNSPLRYHVYYHVIELAARV 165
           RLY+ +   + +R++V Y+V+E+A R+
Sbjct: 246 RLYHIIRAQASIRFYVLYNVLEIADRL 272


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 12/44 (27%), Positives = 27/44 (61%)
 Frame = +3

Query: 255  YRLLHQVLKDQNSELAAKVMIDLLGTYTDENASYAREDALNV*R 386
            ++L   +L D ++ +  +++  L+GT +DE  SY R+ ++ + R
Sbjct: 1593 FQLFRSLLPDFDARMLLEIISRLVGTISDE-TSYLRDYSVEILR 1635


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -2

Query: 382 YTFNASSLAYEAFSSVYVPSRSI-ITLAASSLFWSFN 275
           YT+  + + Y+ F   Y+P  +I     A+ + W FN
Sbjct: 420 YTYQQACIPYDGFHKHYLPGTAIDWVYFAADVAWPFN 456


>SPAPB1E7.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 319

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 191 PVKTSLTNPTRAASSMT**YTWYLRGELGSKLL*SLH 81
           P+KTS T PT+   S T    W +   + +KL   LH
Sbjct: 216 PLKTSKTTPTKKMLSTTDTKDWLVITPVPNKLTRLLH 252


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,772,743
Number of Sequences: 5004
Number of extensions: 30375
Number of successful extensions: 65
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)