Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0393
         (506 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0092 - 22759791-22760676,22761446-22761813,22762202-227622...    29   2.1  
03_06_0116 + 31773295-31773603,31773800-31773946,31774080-317741...    29   2.8  
01_05_0735 - 24749975-24750601,24751411-24751541,24752150-247523...    27   8.7  

>04_04_0092 -
           22759791-22760676,22761446-22761813,22762202-22762207,
           22763365-22763603,22764808-22765339
          Length = 676

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 288 NSELAAKVMIDLLGTYTDENASYA 359
           ++ +A KV ID++GT+TD    YA
Sbjct: 653 DASIAVKVSIDVIGTWTDSETLYA 676


>03_06_0116 +
           31773295-31773603,31773800-31773946,31774080-31774158,
           31777558-31778180
          Length = 385

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 16  AFSQRLTKAPGPKLGMVALQSLWRLYNNLEPNSPLRYHVY 135
           AFS+R  K   PK   + L   W L+ +  P   +R H+Y
Sbjct: 227 AFSKRTKKGKLPKEARLKLLHWWELHYDKWPYPSVRTHIY 266


>01_05_0735 -
           24749975-24750601,24751411-24751541,24752150-24752336,
           24753801-24753898,24754182-24754689
          Length = 516

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/41 (29%), Positives = 25/41 (60%)
 Frame = +1

Query: 61  MVALQSLWRLYNNLEPNSPLRYHVYYHVIELAARVGFVREV 183
           ++A   L  +Y +L PN PL+  +Y+ +I +A  + F+ ++
Sbjct: 195 LLAADCLEIMYTSLSPNGPLK--LYHFIIIVAVALAFLSQL 233


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,810,091
Number of Sequences: 37544
Number of extensions: 177769
Number of successful extensions: 422
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)