Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0393
         (506 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.3  
SB_23483| Best HMM Match : Glyco_hydro_38C (HMM E-Value=0)             29   2.2  
SB_40313| Best HMM Match : Glyco_hydro_38 (HMM E-Value=0)              29   2.2  
SB_59428| Best HMM Match : Ank (HMM E-Value=2.2)                       28   5.1  
SB_37652| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_29062| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_36253| Best HMM Match : 7tm_1 (HMM E-Value=9.99967e-42)             27   8.9  

>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4865

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 452 GNAQVLMLTREPAEMCWDLPMLSL 381
           G   V +LTR+P + CW+L ++SL
Sbjct: 118 GTKDVKILTRKPHKFCWNLSVISL 141


>SB_23483| Best HMM Match : Glyco_hydro_38C (HMM E-Value=0)
          Length = 965

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 252 IYRLLHQVLKDQNSELAAKVMIDLLGTYTDENASYARE 365
           + RL HQ   D++S+L+  V + L G +TD   S   E
Sbjct: 839 LIRLEHQFEADEDSKLSMPVNVSLQGLFTDLEVSKVEE 876


>SB_40313| Best HMM Match : Glyco_hydro_38 (HMM E-Value=0)
          Length = 887

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 252 IYRLLHQVLKDQNSELAAKVMIDLLGTYTDENASYARE 365
           + RL HQ   D++S+L+  V + L G +TD   S   E
Sbjct: 827 LIRLEHQFEADEDSKLSMPVNVSLQGLFTDLEVSKVEE 864


>SB_59428| Best HMM Match : Ank (HMM E-Value=2.2)
          Length = 351

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 106 PNSPLRYHVYYHVIE 150
           P+ PL YH +YHVI+
Sbjct: 288 PDDPLDYHFFYHVID 302


>SB_37652| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 299

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 415 QKCVGICQCCRYTFNASSLAYEAFSSVYVPSRS 317
           ++ VG+C CC      +S A E FS    P  S
Sbjct: 267 RQLVGLCLCCNTATPKNSNANELFSGTAAPQSS 299


>SB_29062| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 285

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -2

Query: 361 LAYEAFSSVYVPSRSIITLAASSL 290
           LAY+ F  VY P+R++++L +S +
Sbjct: 45  LAYDRFLVVYYPTRAMVSLRSSKI 68


>SB_36253| Best HMM Match : 7tm_1 (HMM E-Value=9.99967e-42)
          Length = 481

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
 Frame = -2

Query: 412 KCVGICQCC---RYTFNASSLAYEAFSS 338
           KC G+C CC   RYT N      EA SS
Sbjct: 367 KCCGVCCCCCRRRYTGNRVDSFREASSS 394


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,863,043
Number of Sequences: 59808
Number of extensions: 216990
Number of successful extensions: 471
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)