Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0393
         (506 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70855-1|AAB09161.1|  390|Caenorhabditis elegans Hypothetical pr...    46   2e-05
AC006804-1|AAF60755.1|  340|Caenorhabditis elegans Hypothetical ...    27   5.9  
U80845-2|AAK39179.2|  582|Caenorhabditis elegans Hypothetical pr...    27   7.8  

>U70855-1|AAB09161.1|  390|Caenorhabditis elegans Hypothetical
           protein K08F11.3 protein.
          Length = 390

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 23/43 (53%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
 Frame = +3

Query: 249 EIYRLLHQ-VLKDQNSELAAKVMIDLLGTYTDENASYAREDAL 374
           EI R +H+ +L DQ  + AAKVM  LLGTYT+++A+ AR+DA+
Sbjct: 171 EILRAVHRALLVDQRVDQAAKVMTALLGTYTEKDAAAARDDAM 213


>AC006804-1|AAF60755.1|  340|Caenorhabditis elegans Hypothetical
           protein Y53G8B.2 protein.
          Length = 340

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +1

Query: 127 HVYYHVIELAARVGFVRE-VFTG 192
           H  YH + LA+R GFVRE + TG
Sbjct: 201 HPGYHTLTLASRKGFVREALITG 223


>U80845-2|AAK39179.2|  582|Caenorhabditis elegans Hypothetical
           protein C24A8.1 protein.
          Length = 582

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +3

Query: 270 QVLKDQNSELAAKVMIDLL-GTYTDENASYAREDALNV*RQHWQIPTHFCWFPC 428
           ++L+ + + L +  M DL+ G +    + Y     L+V R HW +P   C+F C
Sbjct: 18  ELLQPEWAYLVSLAMADLIVGAFVMPFSIY-----LSVNRLHWHLPLFVCYFYC 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,604,746
Number of Sequences: 27780
Number of extensions: 164250
Number of successful extensions: 378
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)