Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0393
         (506 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    26   0.26 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    26   0.26 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   5.6  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   7.3  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 25.8 bits (54), Expect = 0.26
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 57  WNGSFAIVMETLQQLRTQLTSKIPCILSCHR 149
           WN +FAI    +  L    T  + C+L  HR
Sbjct: 511 WNSAFAIAPAVISCLGIVATMAVACLLFHHR 541


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 25.8 bits (54), Expect = 0.26
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 57  WNGSFAIVMETLQQLRTQLTSKIPCILSCHR 149
           WN +FAI    +  L    T  + C+L  HR
Sbjct: 601 WNSAFAIAPAVISCLGIVATMAVACLLFHHR 631


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
 Frame = +1

Query: 109 NSPLRYHVYYHVIELAARVGFVREVFTGVEQLRKXF---AXYXPSNEQMQKFIGFYIKC* 279
           N  L+Y+ +  +  L      + E      QL + F     + P+N+ ++KF+ +  +  
Sbjct: 267 NWDLKYNTWEPISNLINCSDILEEFERNRLQLLESFKRKVNFYPNNQDIEKFLNYLKRGG 326

Query: 280 KTKT 291
           KT T
Sbjct: 327 KTLT 330


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 433 C*QGNQQKCVGICQCCRYTFNAS 365
           C  G  +K V   QCC + FN +
Sbjct: 591 CEVGQAKKYVAGEQCCWHCFNCT 613


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,120
Number of Sequences: 438
Number of extensions: 1900
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)