Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0393
         (506 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49190.1 68418.m06088 sucrose synthase / sucrose-UDP glucosyl...    27   7.3  
At5g07280.1 68418.m00830 leucine-rich repeat protein kinase, put...    27   7.3  
At3g45580.1 68416.m04923 zinc finger (C3HC4-type RING finger) fa...    27   7.3  

>At5g49190.1 68418.m06088 sucrose synthase / sucrose-UDP
           glucosyltransferase (SUS2) nearly identical to SP|Q00917
           Sucrose synthase (EC 2.4.1.13) (Sucrose-UDP
           glucosyltransferase) {Arabidopsis thaliana} (SUS2);
           contains Pfam profile: PF00862 sucrose synthase
          Length = 807

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 285 QNSELAAKVMIDLLGTYTDENASYAREDALNV*RQH 392
           +NS+L     + ++G Y DEN S  RE+   + + H
Sbjct: 593 KNSKLRELANLVIVGGYIDENQSRDREEMAEIQKMH 628


>At5g07280.1 68418.m00830 leucine-rich repeat protein kinase,
           putative / extra sporogenous cells (ESP) identical to
           extra sporogenous cells [Arabidopsis thaliana]
           gi|23304947|emb|CAD42912; contains Pfam domains PF00560:
           Leucine Rich Repeat and PF00069: Protein kinase domain
          Length = 1192

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 43  PGPKLGMVALQSLWRLYNNLEPNSPLRYHVYYHVIEL 153
           P     +  LQ L   YNNL  + P +   Y+H IE+
Sbjct: 537 PDKITALAQLQCLVLSYNNLSGSIPSKPSAYFHQIEM 573


>At3g45580.1 68416.m04923 zinc finger (C3HC4-type RING finger)
           family protein contains a Prosite:PS00518 Zinc finger,
           C3HC4 type (RING finger), signature
          Length = 408

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = +3

Query: 66  SFAIVMETLQQLRTQLTSKIPCILS 140
           +FA++M+ +Q +R +LTS  P +++
Sbjct: 119 NFALLMDNVQHIRQRLTSSFPVLVT 143


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,053,191
Number of Sequences: 28952
Number of extensions: 151401
Number of successful extensions: 384
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)