Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0392
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac...    38   0.002
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc...    35   0.013
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    31   0.16 
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c...    29   0.65 
SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,...    26   4.6  
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   8.0  

>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
           Txl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 290

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 15/28 (53%), Positives = 21/28 (75%)
 Frame = +2

Query: 71  ASEYNINSMPTFVFVKNGKKLDEFSGAN 154
           AS   + +MPTFVF +NGK++D  +GAN
Sbjct: 67  ASGLGVKAMPTFVFFENGKQIDMLTGAN 94


>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score = 34.7 bits (76), Expect = 0.013
 Identities = 13/28 (46%), Positives = 21/28 (75%)
 Frame = +2

Query: 71  ASEYNINSMPTFVFVKNGKKLDEFSGAN 154
           A+E  +++MP+F   KNG+K++E  GAN
Sbjct: 64  AAEAGVHAMPSFFLYKNGEKIEEIVGAN 91


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 74  SEYNINSMPTFVFVKNGKKLDEFSG 148
           SEY+I   PT    KNGK++ ++SG
Sbjct: 88  SEYSIRGYPTLNVFKNGKQISQYSG 112


>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 29.1 bits (62), Expect = 0.65
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 71  ASEYNINSMPTFVFVKNGKKLDEFSGAN 154
           A  +++N++P FV +   K L   SGAN
Sbjct: 66  AESFDVNAVPLFVLIHGAKVLARISGAN 93


>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
           alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 546

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 494 FYFYFVRLTQMYNLTNTNQCVR*VSIVLLKTFVSNKYHNVFFFYV 628
           FY+YFVRL  ++ L  T      +S V +K      Y  +FF +V
Sbjct: 251 FYYYFVRLPWLF-LNPTTLLFLLISFVYIKPARLLIYVPLFFIFV 294


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = -3

Query: 184 FKDSCFEFVDVSAREFVQFLAILNEDERRHRVNVVLAGDVLALINVHLHNDDGI*HFGG 8
           F  + +E+VD ++ + + F+  L  +      ++   GD +  INV L + D   +FGG
Sbjct: 114 FSANLYEYVDGNS-DGISFVLNLENNNDTSVYHMTFHGDRVKPINVFLGSTDVTPNFGG 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,570,135
Number of Sequences: 5004
Number of extensions: 48996
Number of successful extensions: 129
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)