Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0392
         (708 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14273| Best HMM Match : DUF1000 (HMM E-Value=0)                     31   0.69 
SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32)           29   3.7  
SB_17740| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-27)           28   8.5  

>SB_14273| Best HMM Match : DUF1000 (HMM E-Value=0)
          Length = 308

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +2

Query: 71  ASEYNINSMPTFVFVKNGKKLDEFSGAN 154
           A++  + +MPTF F KN  K+DE  GA+
Sbjct: 73  AAKQGVTAMPTFQFFKNKVKVDEVRGAD 100


>SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32)
          Length = 456

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 71  ASEYNINSMPTFVFVKNGKKLDEFSGAN 154
           A    I +MPTF F  N  K+DE  GA+
Sbjct: 74  AESCGIRAMPTFHFYHNKAKIDELRGAD 101


>SB_17740| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-27)
          Length = 472

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 77  EYNINSMPTFVFVKNGKKLDEFSGAN 154
           +YN+  +PT     +GK ++EF G N
Sbjct: 208 KYNVKFLPTIYLFHDGKFVEEFEGNN 233


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,007,141
Number of Sequences: 59808
Number of extensions: 316528
Number of successful extensions: 580
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)