Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0390
         (767 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c...    30   0.42 
SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyc...    29   0.55 
SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c...    28   1.3  
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2...    28   1.3  
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    28   1.7  
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    27   3.9  
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    27   3.9  
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...    27   3.9  
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    27   3.9  
SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2 |Schizosacc...    27   3.9  
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    27   3.9  
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po...    26   6.8  
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy...    26   6.8  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    25   9.0  
SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces ...    25   9.0  

>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 959

 Score = 29.9 bits (64), Expect = 0.42
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 195 EVTNNIPENAPEK-EKDMKEDRRPIMANPKRLHYLMRKAMKNLKRKN 332
           EV N + E   E  +      + PI ANPK L + +  A KNLK K+
Sbjct: 837 EVVNVVTEYFKENPDMSFVVAKVPISANPKALSFALTYAKKNLKDKS 883


>SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 442

 Score = 29.5 bits (63), Expect = 0.55
 Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
 Frame = +3

Query: 174 FNSNMTVEVTNNIPENAPEKEKDMKEDRRPIMANPKRL----HYLMRKAMKNLKRKNPNQ 341
           F+ +  +EV N + E   E+ +D +ED   + A+PK      HY +    K   + +  Q
Sbjct: 56  FSEDERLEVKNKVQEEVKEESEDEEEDPAMLRADPKEWKQQDHYAVLGLSKYRYKADTEQ 115

Query: 342 LSRNQQSIKQILR 380
           + +    +K++L+
Sbjct: 116 IKK--AHLKKVLK 126


>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +3

Query: 159 QLQNKFNSNMTVEVTNNIPENAPEKEKDMKEDRRP 263
           Q+QN  N+N++V +++ +P+ +      +  D RP
Sbjct: 12  QIQNPINNNVSVTISDQLPKPSANNPNLLSVDTRP 46


>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 17/61 (27%), Positives = 30/61 (49%)
 Frame = +3

Query: 201 TNNIPENAPEKEKDMKEDRRPIMANPKRLHYLMRKAMKNLKRKNPNQLSRNQQSIKQILR 380
           T N+    PE+ KD+ ED +P  +   R  +  +  + N  R  P   +  QQ ++ +LR
Sbjct: 277 TLNVSTEFPEETKDLSEDTKP--SKQARRFFGQKSIVSN--RNMPTD-NAKQQKVENVLR 331

Query: 381 K 383
           +
Sbjct: 332 R 332


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
 Frame = -1

Query: 623 ASRSLLYFSERSLMMKVLSAISSPFSSTNG---SWPFLERYWHDALRSRT*CRPNEAMFQ 453
           A+  L +F     + K  +  S  +   +G   +W  +ER+W  +L     C P +  F 
Sbjct: 68  ATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFL 127

Query: 452 L 450
           L
Sbjct: 128 L 128


>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 219 FQGCYS*LQQSCLN*ICFV 163
           F GCY+   QSC+N +CF+
Sbjct: 87  FLGCYTMGFQSCINMLCFL 105


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 219 FQGCYS*LQQSCLN*ICFV 163
           F GCY+   QSC+N +CF+
Sbjct: 87  FLGCYTMGFQSCINMLCFL 105


>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 18/65 (27%), Positives = 33/65 (50%)
 Frame = +3

Query: 165 QNKFNSNMTVEVTNNIPENAPEKEKDMKEDRRPIMANPKRLHYLMRKAMKNLKRKNPNQL 344
           QN  ++  T +   +      ++EK+ KE  + +M+N +R  Y   K  +N K +N N  
Sbjct: 531 QNSKSAKKTKKRQRDTLTAEEKEEKEAKELSKMMMSNKQRKLYSKLK-NENSKNENYNNA 589

Query: 345 SRNQQ 359
            RN++
Sbjct: 590 LRNRK 594


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 219 FQGCYS*LQQSCLN*ICFV 163
           F GCY+   QSC+N +CF+
Sbjct: 87  FLGCYTMGFQSCINMLCFL 105


>SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +3

Query: 276 PKRLHYLMRKAMKNLKRKNPNQLSRN 353
           PK    L +K  KNL RK  N+L RN
Sbjct: 169 PKPSCPLFKKMQKNLSRKLDNELERN 194


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 219 FQGCYS*LQQSCLN*ICFV 163
           F GCY+   QSC+N +CF+
Sbjct: 87  FLGCYTMGFQSCINMLCFL 105


>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 284

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +3

Query: 231 KEKDMKEDRRPIMANPKRLHYLMRKAMKNLKRKNPNQLSRNQQS 362
           K+K  K+       +PK+L  + +K  K  K+K+    S+ ++S
Sbjct: 174 KKKSKKKTSTGSALDPKKLEKITKKKKKEHKKKDKESSSKKRKS 217


>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 667

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 15/69 (21%), Positives = 33/69 (47%)
 Frame = +3

Query: 156 FQLQNKFNSNMTVEVTNNIPENAPEKEKDMKEDRRPIMANPKRLHYLMRKAMKNLKRKNP 335
           F++  K N+ +  E   ++ E   E+++ + E   PI++  K+     +K  +  K+K  
Sbjct: 55  FEILEKENNAINSEAEKSVSEE--EQDEPLVEGESPIVSTNKKAKNKKKKKKQQKKKKVT 112

Query: 336 NQLSRNQQS 362
            +   + QS
Sbjct: 113 GKRDLDNQS 121


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 168 NKFNSNMTVEVTNNIPENAPEKEKDMKEDRRPIMA 272
           +K +S++  E T N P + P K   + ED +P+ +
Sbjct: 341 DKLSSHVQSE-TENAPVSKPSKPNTLTEDEKPLQS 374


>SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 425

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
 Frame = +2

Query: 368 TNFEKD--VVYLYQFSRTPLLPSTSPYCLKVETWLRLAGIKYENVEHHA----NIVPKKA 529
           +N EKD  V+     + TP + S SP+  K      LA +K E  E++     ++ P K+
Sbjct: 253 SNQEKDEGVIEKVAVNNTPSVSSKSPFPKKKSFSSMLAQVKKEKAENNGSDGYDLQPTKS 312

Query: 530 NCRSWN*MAKK*PIALSSSKIFPRNTTKIL 619
               +  + +K    +SS+ +   ++ K L
Sbjct: 313 QLELYQSILRKRANQVSSTSLTKSSSPKPL 342


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,061,250
Number of Sequences: 5004
Number of extensions: 61690
Number of successful extensions: 196
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)