Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0390
(767 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12446| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 6e-10
SB_46116| Best HMM Match : No HMM Matches (HMM E-Value=.) 61 8e-10
SB_31647| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 9e-07
SB_53541| Best HMM Match : GST_C (HMM E-Value=0.02) 48 6e-06
SB_47009| Best HMM Match : WSC (HMM E-Value=0.16) 48 8e-06
SB_8572| Best HMM Match : RVT_1 (HMM E-Value=5.6e-17) 41 0.001
SB_53542| Best HMM Match : GST_C (HMM E-Value=0.018) 39 0.005
SB_39252| Best HMM Match : PEX11 (HMM E-Value=6.4e-35) 30 2.4
SB_5871| Best HMM Match : IBR (HMM E-Value=0.00018) 29 3.1
SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_9978| Best HMM Match : Pkinase (HMM E-Value=3.4e-17) 29 4.1
SB_5070| Best HMM Match : TPR_2 (HMM E-Value=1.4e-13) 28 7.2
>SB_12446| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 615
Score = 61.7 bits (143), Expect = 6e-10
Identities = 29/80 (36%), Positives = 49/80 (61%)
Frame = +1
Query: 517 SKKGQLPFVELNGEEIADSTFIIKDLSEKYNKDLDAGLTSEQRVISHAMISMIENHLSWV 696
S K ++PF+E G+++ D+ F IK L++K+N D DA L++EQ+ + HA+ +M E + W
Sbjct: 317 SSKEKVPFIEYQGDKVQDTNFCIKYLNKKFNVDPDAHLSAEQKAMCHAIQAMAEENTYWS 376
Query: 697 ILWWRAKYPDSVIKGYQVNL 756
+ ++R K Y NL
Sbjct: 377 LAYYRWVDNYQETKKYYSNL 396
Score = 34.3 bits (75), Expect = 0.11
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +2
Query: 389 VYLYQFSRTPLLPSTSPYCLKVETWLRLAGIKYEN 493
V L+Q P +P P LK+ET+LR+ I YEN
Sbjct: 275 VILHQHPPGPTIPGFLPNSLKLETYLRMVKIPYEN 309
>SB_46116| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 169
Score = 61.3 bits (142), Expect = 8e-10
Identities = 25/65 (38%), Positives = 45/65 (69%)
Frame = +1
Query: 517 SKKGQLPFVELNGEEIADSTFIIKDLSEKYNKDLDAGLTSEQRVISHAMISMIENHLSWV 696
S K ++PF+E G+++ D+ F IK L++K+N D DA L++EQ+ + HA+ +M E + W
Sbjct: 81 SSKEKVPFIEYQGDKVQDTNFCIKYLNKKFNVDPDAHLSAEQKAMCHAIQAMAEENTYWS 140
Query: 697 ILWWR 711
+ ++R
Sbjct: 141 LAYYR 145
Score = 34.3 bits (75), Expect = 0.11
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +2
Query: 389 VYLYQFSRTPLLPSTSPYCLKVETWLRLAGIKYEN 493
V L+Q P +P P LK+ET+LR+ I YEN
Sbjct: 39 VILHQHPPGPTIPGFLPNSLKLETYLRMVKIPYEN 73
>SB_31647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 51.2 bits (117), Expect = 9e-07
Identities = 19/56 (33%), Positives = 40/56 (71%)
Frame = +1
Query: 517 SKKGQLPFVELNGEEIADSTFIIKDLSEKYNKDLDAGLTSEQRVISHAMISMIENH 684
S KG++P++E NG+ +ADS F ++ L++++ DLDA L+++ R ++ + M++ +
Sbjct: 71 SSKGKIPWIEYNGQCVADSNFCVEFLNKEFGVDLDAKLSAKDRAVARTLAVMLDEN 126
Score = 37.1 bits (82), Expect = 0.016
Identities = 19/38 (50%), Positives = 26/38 (68%)
Frame = +2
Query: 380 KDVVYLYQFSRTPLLPSTSPYCLKVETWLRLAGIKYEN 493
K VV L Q + +PS SP+ LK+E++LRLA I Y+N
Sbjct: 27 KGVVLLRQPAVATTVPSISPFPLKLESYLRLAKIPYKN 64
>SB_53541| Best HMM Match : GST_C (HMM E-Value=0.02)
Length = 256
Score = 48.4 bits (110), Expect = 6e-06
Identities = 21/63 (33%), Positives = 37/63 (58%)
Frame = +1
Query: 523 KGQLPFVELNGEEIADSTFIIKDLSEKYNKDLDAGLTSEQRVISHAMISMIENHLSWVIL 702
K +P VE +G+ + S I L+E+Y +LD L+ EQ+ + + +M++ H SW +L
Sbjct: 53 KVNMPAVEYDGKVVVHSARCIPYLNERYGVELDRDLSEEQKATATTITAMLDEHTSWTLL 112
Query: 703 WWR 711
+ R
Sbjct: 113 YHR 115
Score = 35.5 bits (78), Expect = 0.048
Identities = 15/29 (51%), Positives = 23/29 (79%)
Frame = +2
Query: 401 QFSRTPLLPSTSPYCLKVETWLRLAGIKY 487
+F++ P+ PS SP CLK+ET+ R+A I+Y
Sbjct: 15 RFAKLPV-PSISPSCLKLETYARMANIQY 42
>SB_47009| Best HMM Match : WSC (HMM E-Value=0.16)
Length = 852
Score = 48.0 bits (109), Expect = 8e-06
Identities = 20/57 (35%), Positives = 36/57 (63%)
Frame = +1
Query: 514 RSKKGQLPFVELNGEEIADSTFIIKDLSEKYNKDLDAGLTSEQRVISHAMISMIENH 684
+S KG+ P++E G+ +ADS F I+ L+ ++ DLD GL+ + ++ A M+E +
Sbjct: 644 KSSKGKFPWIEHKGKHVADSQFCIEYLTREFGVDLDEGLSEADKAVATAFRVMLEEN 700
Score = 44.4 bits (100), Expect = 1e-04
Identities = 20/40 (50%), Positives = 29/40 (72%), Gaps = 2/40 (5%)
Frame = +2
Query: 377 EKDVVYLYQFSRTPLLP--STSPYCLKVETWLRLAGIKYE 490
+++ V L+QF R P LP + SP CLK+ETW+R+A I Y+
Sbjct: 598 DQNPVILHQFPRNPRLPVPNISPPCLKLETWMRMAKIPYD 637
>SB_8572| Best HMM Match : RVT_1 (HMM E-Value=5.6e-17)
Length = 1432
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/41 (43%), Positives = 28/41 (68%)
Frame = +1
Query: 517 SKKGQLPFVELNGEEIADSTFIIKDLSEKYNKDLDAGLTSE 639
S KG+LP++E G+ IADS F + L++++ D+D LT E
Sbjct: 1190 SSKGKLPWIEYQGKSIADSNFCVDFLNKEFFVDVDEHLTVE 1230
>SB_53542| Best HMM Match : GST_C (HMM E-Value=0.018)
Length = 261
Score = 38.7 bits (86), Expect = 0.005
Identities = 17/63 (26%), Positives = 34/63 (53%)
Frame = +1
Query: 523 KGQLPFVELNGEEIADSTFIIKDLSEKYNKDLDAGLTSEQRVISHAMISMIENHLSWVIL 702
K +P +E + + + S I L+E+Y +LD L+ EQ+ + + +M++ SW +
Sbjct: 59 KVNMPAIEYDDKVVVHSARCIPYLNERYGLELDRDLSEEQKATATTITAMLDEKTSWTLH 118
Query: 703 WWR 711
+ R
Sbjct: 119 YHR 121
Score = 35.5 bits (78), Expect = 0.048
Identities = 15/29 (51%), Positives = 23/29 (79%)
Frame = +2
Query: 401 QFSRTPLLPSTSPYCLKVETWLRLAGIKY 487
+F++ P+ PS SP CLK+ET+ R+A I+Y
Sbjct: 21 RFAKLPV-PSISPSCLKLETYARMANIQY 48
>SB_39252| Best HMM Match : PEX11 (HMM E-Value=6.4e-35)
Length = 239
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Frame = -3
Query: 621 IKIFVVFLGKIFDDESAI-----GYFFAIQFHERQLAFFGTILA*CSTFSYLMPAKRS 463
+++ + +G + D +A+ G+ +A + + FGTI + C ++YL PAK S
Sbjct: 176 LELLISIVGSLADAVNAVHWSCPGFLWAGCLPKSAIGLFGTISSVCLMYNYLYPAKPS 233
>SB_5871| Best HMM Match : IBR (HMM E-Value=0.00018)
Length = 843
Score = 29.5 bits (63), Expect = 3.1
Identities = 10/32 (31%), Positives = 21/32 (65%)
Frame = +1
Query: 556 EEIADSTFIIKDLSEKYNKDLDAGLTSEQRVI 651
EE+ T I+KD++ +Y ++L A + ++V+
Sbjct: 608 EEVKQETIIVKDVARRYYRELRAAIDEGEKVL 639
>SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2839
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +3
Query: 162 LQNKFNSNMTV-EVTNNIPENAPEKEKDMKEDRRPIMANPKRL 287
++NK N +T E T PEN EK+ K R N +RL
Sbjct: 634 MENKENIEITKSEKTQEAPENTTEKDDSKKRSRNRSERNKRRL 676
>SB_9978| Best HMM Match : Pkinase (HMM E-Value=3.4e-17)
Length = 348
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +3
Query: 225 PEKEKDMKEDRRPIMANPKRLHYLMRKAMKNLKRKNPNQLSRNQ 356
P++ +K+ R+P NP H K +K +K K +L++ +
Sbjct: 19 PQRNVYVKKRRKPASRNPSSQHKKTEKKLKKVKEKVDQKLTKGK 62
>SB_5070| Best HMM Match : TPR_2 (HMM E-Value=1.4e-13)
Length = 732
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +1
Query: 472 GRH*VRERRASCQYRSKKGQLPFVELNGEEIADSTFIIKDLSEKYNKDLDAGLT--SEQR 645
G H ++ R+++ + GQ+P + ++ S F K L+E KDL L S QR
Sbjct: 181 GSHQIQNRKSAAELAEYCGQMPLLIEIAAKLVTSGFNPKMLAETMKKDLYRVLNQRSYQR 240
Query: 646 VI 651
V+
Sbjct: 241 VV 242
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,143,319
Number of Sequences: 59808
Number of extensions: 450065
Number of successful extensions: 3222
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3220
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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