Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0389
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    27   3.5  
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    26   6.2  
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    26   6.2  

>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
 Frame = -3

Query: 253  VNFGMATRTNHMSWM-RPNRYYGCNNLWPCCCW 158
            +NFG       +SW+ R     G   +W CC W
Sbjct: 2042 LNFGDEAGAGVVSWIVRACIVQGFQQIWACCLW 2074


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 178 NCYNRSTGWAASNSYDLS*LPCRN*QSTQTKPGLI 282
           NC  RST W   ++Y    LP  + + T  KPG +
Sbjct: 486 NCVERSTTWFIESNYH-DGLPSDSRKITYRKPGFL 519


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 243 PKLTINTNKTWSHCIHNWCNYI 308
           PKL +  N +  HCI  W  Y+
Sbjct: 494 PKLKLKKNDSLHHCIFPWLPYL 515


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,550,742
Number of Sequences: 5004
Number of extensions: 45757
Number of successful extensions: 99
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)