Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0389
         (717 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59267| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.93 
SB_22415| Best HMM Match : TT_ORF2 (HMM E-Value=3.7)                   31   1.2  
SB_41382| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_18023| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  

>SB_59267| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1444

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -3

Query: 172  PCCCWVLRCVRAG-RPYTPHCLRVARWSSRRRL*NICLAPYI 50
            P  C VLR VR   +PY  H LRV R  ++  + ++   PY+
Sbjct: 1079 PYVCHVLRVVRVHTKPYVCHVLRVVRVPTKPYVCHVLRVPYV 1120



 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -3

Query: 172  PCCCWVLRCVRAG-RPYTPHCLRVARWSSRRR 80
            P  C VLR VR   +PY  H LRVA  ++  R
Sbjct: 1283 PYVCHVLRVVRVPTKPYVCHVLRVAEKTAEER 1314


>SB_22415| Best HMM Match : TT_ORF2 (HMM E-Value=3.7)
          Length = 483

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -3

Query: 235 TRTNHMSWMRPNRYYGCNNLWPCCCWVLRCVRA 137
           T TNH +    N  + C+ LW C CW + CV A
Sbjct: 399 TMTNHSAL---NHCFDCHPLW-CACWPVYCVTA 427


>SB_41382| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 48  HMYGARQMFYSLRLLLHLAT 107
           H Y  RQ +Y LR +LH+AT
Sbjct: 251 HYYKLRQHYYKLRQVLHIAT 270


>SB_18023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 500

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -2

Query: 341 IKQHPHIHPKRNIIAPVMYAMRPGFVCVDC 252
           + QHP  HP   +  PV YA   G    DC
Sbjct: 431 LPQHPPFHPPMFLPGPVPYAANGGSNAKDC 460


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,293,297
Number of Sequences: 59808
Number of extensions: 364869
Number of successful extensions: 701
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)