Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0389
         (717 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U67956-1|AAB07690.2|  157|Caenorhabditis elegans Hypothetical pr...    34   0.088
AL110500-18|CAB54478.1|  118|Caenorhabditis elegans Hypothetical...    33   0.15 
AL032626-23|CAE17974.1|   88|Caenorhabditis elegans Hypothetical...    32   0.36 
Z47069-3|CAE17781.1|  141|Caenorhabditis elegans Hypothetical pr...    30   1.4  
M93256-1|AAB59181.1| 1110|Caenorhabditis elegans tra-1 protein.        29   3.3  
AL117202-5|CAB61040.2| 1109|Caenorhabditis elegans Hypothetical ...    29   3.3  
AL033512-2|CAA22074.1|  390|Caenorhabditis elegans Hypothetical ...    29   4.4  
U41994-13|AAK31527.2| 1425|Caenorhabditis elegans Neuronal symme...    28   5.8  
AL110500-20|CAI79282.1|  110|Caenorhabditis elegans Hypothetical...    28   5.8  
AL031633-14|CAA21032.1|  903|Caenorhabditis elegans Hypothetical...    28   7.7  
AL031633-13|CAA21027.1|  951|Caenorhabditis elegans Hypothetical...    28   7.7  
AL031633-12|CAA21026.2| 1107|Caenorhabditis elegans Hypothetical...    28   7.7  
AJ132701-1|CAA10737.1| 1107|Caenorhabditis elegans centaurin gam...    28   7.7  
AJ132700-1|CAA10736.1|  952|Caenorhabditis elegans centaurin gam...    28   7.7  

>U67956-1|AAB07690.2|  157|Caenorhabditis elegans Hypothetical
           protein F16F9.1 protein.
          Length = 157

 Score = 34.3 bits (75), Expect = 0.088
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 355 DSCMDVHHKCPHCDTYLGRYRR 420
           DSC D HH CP C+  LG  +R
Sbjct: 134 DSCKDAHHYCPRCNALLGIKKR 155


>AL110500-18|CAB54478.1|  118|Caenorhabditis elegans Hypothetical
           protein Y87G2A.18 protein.
          Length = 118

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 355 DSCMDVHHKCPHCDTYLGRYRR 420
           D  +DV+H CP C  +LGR+ R
Sbjct: 96  DQLLDVNHSCPACKKFLGRFNR 117


>AL032626-23|CAE17974.1|   88|Caenorhabditis elegans Hypothetical
           protein Y37D8A.26 protein.
          Length = 88

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +1

Query: 364 MDVHHKCPHCDTYLGRYRR 420
           MDVHH+CP+C+  LG+  R
Sbjct: 69  MDVHHRCPNCNKSLGKRDR 87


>Z47069-3|CAE17781.1|  141|Caenorhabditis elegans Hypothetical
           protein F36G3.3 protein.
          Length = 141

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 358 SCMDVHHKCPHCDTYLGRYRR 420
           SC D+ H CP+C   +G +RR
Sbjct: 120 SCKDIIHTCPNCRAMIGVHRR 140


>M93256-1|AAB59181.1| 1110|Caenorhabditis elegans tra-1 protein.
          Length = 1110

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 439 DHKGRFIDDSDRGKYRNEDIYGVRPYSCQ 353
           D +  F + SDR K++N     ++PYSCQ
Sbjct: 312 DCEKAFSNASDRAKHQNRTHSNLKPYSCQ 340


>AL117202-5|CAB61040.2| 1109|Caenorhabditis elegans Hypothetical
           protein Y47D3A.6a protein.
          Length = 1109

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 439 DHKGRFIDDSDRGKYRNEDIYGVRPYSCQ 353
           D +  F + SDR K++N     ++PYSCQ
Sbjct: 311 DCEKAFSNASDRAKHQNRTHSNLKPYSCQ 339


>AL033512-2|CAA22074.1|  390|Caenorhabditis elegans Hypothetical
           protein Y49A3A.3 protein.
          Length = 390

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -2

Query: 155 TEVCKGWKALHPPL 114
           TE  +GWK++HPPL
Sbjct: 331 TEATEGWKSIHPPL 344


>U41994-13|AAK31527.2| 1425|Caenorhabditis elegans Neuronal symmetry
           protein 1 protein.
          Length = 1425

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 589 QTHSHNHRYTYILYLDLNNRSCYPRNNSNDVS 494
           +TH+H     YI + D N    Y +NN++D S
Sbjct: 171 KTHAHLPMIVYIHHQDSNQLQSYDKNNNDDDS 202


>AL110500-20|CAI79282.1|  110|Caenorhabditis elegans Hypothetical
           protein Y87G2A.19 protein.
          Length = 110

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 367 DVHHKCPHCDTYLGRYRR 420
           D  H CP C  ++G YRR
Sbjct: 88  DAEHYCPSCRAWIGTYRR 105


>AL031633-14|CAA21032.1|  903|Caenorhabditis elegans Hypothetical
           protein Y39A1A.15c protein.
          Length = 903

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 151 SVPNNNRATNCYNRSTGWAASN 216
           S+P N R  +C N S+ WA+ N
Sbjct: 626 SIPGNGRCADCGNPSSEWASIN 647


>AL031633-13|CAA21027.1|  951|Caenorhabditis elegans Hypothetical
           protein Y39A1A.15b protein.
          Length = 951

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 151 SVPNNNRATNCYNRSTGWAASN 216
           S+P N R  +C N S+ WA+ N
Sbjct: 674 SIPGNGRCADCGNPSSEWASIN 695


>AL031633-12|CAA21026.2| 1107|Caenorhabditis elegans Hypothetical
           protein Y39A1A.15a protein.
          Length = 1107

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 151 SVPNNNRATNCYNRSTGWAASN 216
           S+P N R  +C N S+ WA+ N
Sbjct: 830 SIPGNGRCADCGNPSSEWASIN 851


>AJ132701-1|CAA10737.1| 1107|Caenorhabditis elegans centaurin gamma
           1B protein.
          Length = 1107

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 151 SVPNNNRATNCYNRSTGWAASN 216
           S+P N R  +C N S+ WA+ N
Sbjct: 830 SIPGNGRCADCGNPSSEWASIN 851


>AJ132700-1|CAA10736.1|  952|Caenorhabditis elegans centaurin gamma
           1A protein.
          Length = 952

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 151 SVPNNNRATNCYNRSTGWAASN 216
           S+P N R  +C N S+ WA+ N
Sbjct: 675 SIPGNGRCADCGNPSSEWASIN 696


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,231,099
Number of Sequences: 27780
Number of extensions: 263699
Number of successful extensions: 618
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)