Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0389
         (717 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   3.8  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   3.8  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   8.8  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   8.8  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   8.8  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 47  EEDCHFFPLFKQTCF 3
           E D  +FP  +QTCF
Sbjct: 146 EIDVEYFPFDEQTCF 160


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 47  EEDCHFFPLFKQTCF 3
           E D  +FP  +QTCF
Sbjct: 146 EIDVRYFPFDQQTCF 160


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 376 GVRPYSCQYSRESSS 332
           G +PY C+Y  +S S
Sbjct: 116 GEKPYQCEYCSKSFS 130


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 157 VLRCVRAGRPYTPH 116
           V+ CV   +PY PH
Sbjct: 99  VVSCVTKDQPYRPH 112


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 157 VLRCVRAGRPYTPH 116
           V+ CV   +PY PH
Sbjct: 99  VVSCVTKDQPYRPH 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,913
Number of Sequences: 438
Number of extensions: 3233
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)