Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0389
         (717 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g53640.1 68416.m05925 protein kinase family protein contains ...    30   1.3  
At1g66610.1 68414.m07569 seven in absentia (SINA) protein, putat...    29   3.1  
At3g13810.1 68416.m01744 zinc finger (C2H2 type) family protein ...    28   5.4  
At4g34220.1 68417.m04862 leucine-rich repeat transmembrane prote...    28   7.1  
At4g03740.1 68417.m00513 hypothetical protein                          27   9.4  

>At3g53640.1 68416.m05925 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 642

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = -3

Query: 583 HSHNHRYTYILYLDLNNRSCYP--RNNSNDVSNQ*LII*NKKELETFEN*DHKGRFIDDS 410
           H H HR+++ L  D N ++ YP   N  ND          + +LE  EN   KG    +S
Sbjct: 34  HHHKHRHSHHLDEDGNEKNVYPFLGNPGND---------GELDLEEGENLKKKGSIDRES 84

Query: 409 DRGKYR 392
           +R  YR
Sbjct: 85  NRDNYR 90


>At1g66610.1 68414.m07569 seven in absentia (SINA) protein, putative
           similar to SIAH1 protein [Brassica napus var. napus]
           GI:7657876; contains Pfam profile PF03145: Seven in
           absentia protein family
          Length = 366

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 361 CMDVHHKCPHCDTYLGRYR 417
           C +V +KCP+C   +G YR
Sbjct: 81  CTNVSNKCPYCSLAIGNYR 99


>At3g13810.1 68416.m01744 zinc finger (C2H2 type) family protein
           similar to finger protein pcp1 GB:S48856 from [Solanum
           tuberosum]  contains Pfam domain, PF00096: Zinc finger,
           C2H2 type
          Length = 513

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 592 AQTHSHNHRYTYILYLDLNNRSCYPRNNSND 500
           + + SHNH     L+ D NN +    NNSN+
Sbjct: 273 SSSSSHNHNIINSLHFDTNNGNTNNSNNSNN 303


>At4g34220.1 68417.m04862 leucine-rich repeat transmembrane protein
           kinase, putative protein kinase TMKL1, Arabidopsis
           thaliana, PID:E353150
          Length = 757

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -3

Query: 262 VLIVNFGMATRTNHMSWMRPNRYYGCNNLWPCCCWVLRCVRAGRPYTPHCLRV 104
           VL++ F  +  T+ +S +R   Y   ++  PC    + C   G+P TP   RV
Sbjct: 32  VLLLTFKYSILTDPLSVLRNWNY---DDATPCLWTGVTCTELGKPNTPDMFRV 81


>At4g03740.1 68417.m00513 hypothetical protein 
          Length = 345

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = -3

Query: 232 RTNHMSWMRPNRYYGC-NNLWPCCCWVLRCVRAGRPY 125
           R N   W R      C + LWPC    + C++  RP+
Sbjct: 60  RNNQEIWFRTFALGSCPHTLWPCWVSQVCCIKIFRPH 96


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,216,915
Number of Sequences: 28952
Number of extensions: 237783
Number of successful extensions: 494
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)