Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0387
(694 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31440| Best HMM Match : 2-oxoacid_dh (HMM E-Value=3.5e-14) 115 3e-26
SB_29025| Best HMM Match : No HMM Matches (HMM E-Value=.) 73 2e-13
SB_10000| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0) 53 2e-07
SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0) 52 6e-07
SB_16687| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 1e-05
SB_25156| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_6223| Best HMM Match : Ras (HMM E-Value=0) 30 1.5
SB_35983| Best HMM Match : Ice_nucleation (HMM E-Value=0.42) 30 2.0
SB_16005| Best HMM Match : bZIP_Maf (HMM E-Value=5.6e-32) 29 4.7
SB_58744| Best HMM Match : ResIII (HMM E-Value=0.14) 28 6.2
SB_47335| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_38466| Best HMM Match : DUF59 (HMM E-Value=8.2) 28 8.3
SB_46059| Best HMM Match : Astacin (HMM E-Value=2.8e-17) 28 8.3
SB_45340| Best HMM Match : RVT_1 (HMM E-Value=1.2e-15) 28 8.3
SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
>SB_31440| Best HMM Match : 2-oxoacid_dh (HMM E-Value=3.5e-14)
Length = 107
Score = 115 bits (277), Expect = 3e-26
Identities = 52/80 (65%), Positives = 64/80 (80%)
Frame = +3
Query: 258 PVLRDVDTLGMADIEKKIKELAVKGCDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPP 437
PVLR+V+++ ADIEK I L K + L +ED+ GG FTI+NGGVFGSLM TPIINPP
Sbjct: 28 PVLRNVESMNFADIEKAINALGEKARNNDLAIEDMDGGTFTISNGGVFGSLMGTPIINPP 87
Query: 438 QSAILGMHAIKDRPMAVNGQ 497
QSAILGMHAI +RP+A+NG+
Sbjct: 88 QSAILGMHAINERPVAINGK 107
Score = 36.7 bits (81), Expect = 0.018
Identities = 14/25 (56%), Positives = 21/25 (84%)
Frame = +1
Query: 181 IDGDDVVYHNYFDVSMAVSTPRGLV 255
I+ + +VY +Y D+S+AVSTP+GLV
Sbjct: 2 IEDNQIVYRDYVDISVAVSTPKGLV 26
>SB_29025| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 431
Score = 73.3 bits (172), Expect = 2e-13
Identities = 32/62 (51%), Positives = 48/62 (77%)
Frame = +1
Query: 1 KNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNAS 180
+N+ AMLTTFN+++M IM++R+ Y +AF K+HG++LGFMS +VKA AL+ P VNA+
Sbjct: 224 QNTYAMLTTFNDIDMSNIMEMRQTYKDAFFKKHGLKLGFMSAFVKAAAYALESLPVVNAA 283
Query: 181 ID 186
+
Sbjct: 284 CE 285
Score = 45.6 bits (103), Expect = 4e-05
Identities = 19/23 (82%), Positives = 22/23 (95%)
Frame = +2
Query: 509 PMMYLALSYDHRLIDGRESVGFL 577
PMMY+AL+YDHRLIDGRE+V FL
Sbjct: 320 PMMYVALTYDHRLIDGREAVTFL 342
>SB_10000| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
Length = 382
Score = 53.2 bits (122), Expect = 2e-07
Identities = 31/105 (29%), Positives = 57/105 (54%)
Frame = +3
Query: 255 TPVLRDVDTLGMADIEKKIKELAVKGCDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINP 434
TPV+R+ L ++ I ++A + D KL + GG+ T++N G+FG + IINP
Sbjct: 263 TPVIRNAAYLDLSQISLVAHDIATRARDNKLHEHEFHGGSLTLSNLGMFGVTEFSAIINP 322
Query: 435 PQSAILGMHAIKDRPMAVNGQVEILR*CTWRCPTITV*SMVANPW 569
Q++IL + A + ++ +GQ++ + C V + +A+ W
Sbjct: 323 LQASILAVGATR-LSVSTDGQLQNVITVKLSCDARVVDNELASRW 366
>SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
Length = 441
Score = 51.6 bits (118), Expect = 6e-07
Identities = 23/77 (29%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Frame = +1
Query: 31 NEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNASIDGD--DVVY 204
+E+ + ++D +K E+R G++L FM ++KA AL+++P +N+S+D + + +
Sbjct: 239 DEILLNELVDFKKHINPMLEQR-GVKLSFMPLFIKAASMALQQFPILNSSVDPECTKITF 297
Query: 205 HNYFDVSMAVSTPRGLV 255
++ +A+ TP+GLV
Sbjct: 298 KAAHNIGLAMDTPQGLV 314
Score = 50.4 bits (115), Expect = 1e-06
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Frame = +3
Query: 258 PVLRDVDTLGMADIEKKIKELAVKGCDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPP 437
P +++V + +I ++K L G G+L ED+TGG F+++N G G + P++ PP
Sbjct: 316 PNVKNVQLKSVFEIAVELKRLHQLGLKGQLGTEDMTGGTFSLSNIGSIGGTYAKPVVLPP 375
Query: 438 QSAILGMHAIKDRP-MAVNGQV 500
+ AI + I+ P NG V
Sbjct: 376 EVAIGALGKIQVLPRFNSNGDV 397
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +2
Query: 512 MMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLLDV 628
+M ++ S DHR+I+G F K LE+P +++D+
Sbjct: 402 VMNVSWSADHRIIEGAVMCRFSNLWKSYLENPASMMIDM 440
>SB_16687| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 407
Score = 47.6 bits (108), Expect = 1e-05
Identities = 26/74 (35%), Positives = 42/74 (56%)
Frame = +1
Query: 34 EVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNASIDGDDVVYHNY 213
+V M ++++RKQ E + + +L F VK+ A ++ PE N+S GD + +
Sbjct: 235 DVKMDQLIEIRKQLNE--QGKGSYKLSINDFIVKSCALACRQVPEANSSWMGDFIRRYEN 292
Query: 214 FDVSMAVSTPRGLV 255
DVS+AVST GL+
Sbjct: 293 VDVSVAVSTDNGLI 306
Score = 34.7 bits (76), Expect = 0.072
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +2
Query: 512 MMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLL 622
+M + LS DHR++DG +L K+ LE+P +LL
Sbjct: 371 VMSVTLSCDHRVVDGAVGAQWLAVFKKYLENPMTMLL 407
>SB_25156| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 223
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Frame = -3
Query: 692 QLPEKAIMPYPVYSAGET*TTTR---PAADASDLPATL*SLPGSPRIRDHRSDGDRRTAP 522
Q+P +P+PV + + T + P+ D+ +P + PG R R P
Sbjct: 84 QIPAITPVPFPVTTTEQILGTVQEPFPSLDSRPVPVNVVGPPGETR--------QRPLQP 135
Query: 521 GTSSEDLNLTIHRHRTIFDSVHTQNCA 441
GT S D + ++ + DS++ NC+
Sbjct: 136 GTVSPDRGFILPKYWLMDDSINDINCS 162
>SB_6223| Best HMM Match : Ras (HMM E-Value=0)
Length = 1665
Score = 30.3 bits (65), Expect = 1.5
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 6/110 (5%)
Frame = +1
Query: 19 LTTFNEVNMKPIMDLRKQYGEAFEKR-----HGIRLGFMSFYVKAVVEALKRYPEVNASI 183
L N N K + + G F R HGI + +SFY V +L + S
Sbjct: 612 LEDLNYDNYKDRLAVASSDGRTFRNRFCGLCHGIPVENLSFYGLFFVCSLT---PLKGST 668
Query: 184 DGDDVVYHNYFDVSMAVSTPR-GLVRRFCVMSIPSAWQTSRRKSKSWQSK 330
+ + + + S TP+ G+ RR+C+ +PS +Q + ++ S K
Sbjct: 669 QSEALQFLFEY-CSQPYQTPKEGMYRRYCIDKVPSCYQGNASQNNSLSEK 717
>SB_35983| Best HMM Match : Ice_nucleation (HMM E-Value=0.42)
Length = 216
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 281 PRHGRHREENQRAGSQRM*RQADR*RSDR 367
PRHG R +N R GS+R R R +DR
Sbjct: 156 PRHGLKRTDNTRHGSRRTARYTTRLETDR 184
>SB_16005| Best HMM Match : bZIP_Maf (HMM E-Value=5.6e-32)
Length = 160
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = -3
Query: 521 GTSSEDLNLTIHRHRTIFDSVHTQNCALRRVDDRRRHQGTEHTTVGDGE 375
G S+E+ + +R RT+ + + NC ++R+ ++ + T V D E
Sbjct: 78 GLSTEEQSRIKYRRRTLKNRGYAHNCRIKRISQKKSLEETNWELVQDLE 126
>SB_58744| Best HMM Match : ResIII (HMM E-Value=0.14)
Length = 831
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Frame = +1
Query: 124 FYVKAVVEALKRYPEVNASIDGDDV---VYHNYFDVSMA-VSTPRGLVRRFCVMSIPSAW 291
+Y VV A R+P V+A++ G D+ VY D+ A V P+ ++R + S W
Sbjct: 85 YYSLFVVGAHLRFPSVDATLRGQDISAGVYQEIRDLGGAGVIAPKPVMRGPDINDDGSVW 144
Query: 292 QTSRRK 309
S +
Sbjct: 145 WVSHER 150
>SB_47335| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 28.3 bits (60), Expect = 6.2
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = -1
Query: 487 TAIGRSLIACIPRIA-LC-GGLMIGVDIREPNTPPLVMVKLPPVRSSTVSL--PSHPLTA 320
+A+G S++ C+P +A LC ++G+ +T L LPP TVS PS P
Sbjct: 433 SAVGSSILQCLPVLAGLCVTSYLVGMIFWFLST--LSTTSLPPTEEMTVSFFNPSTPTFR 490
Query: 319 SSLIF 305
+L F
Sbjct: 491 GTLRF 495
>SB_38466| Best HMM Match : DUF59 (HMM E-Value=8.2)
Length = 360
Score = 27.9 bits (59), Expect = 8.3
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Frame = +1
Query: 49 PIMDLRKQYGEAFEKRHGI---RLGFMSFYVKAVVEALKRYPEVNASIDGDDVVYHNYFD 219
P+++ + G EK + + RL +Y V A R+P VNA++ G D+ + D
Sbjct: 184 PLLEQKGPEGLDPEKYYSLGPERLDPEKYYSLFVGGAHLRFPSVNATLRGQDI---SAGD 240
Query: 220 VSMAVSTPRGLVRRFCVMSIPSAWQTSRRK 309
V P+ ++R + S W S +
Sbjct: 241 TKSGVIAPKPVMRGPDINDDGSVWWVSHER 270
>SB_46059| Best HMM Match : Astacin (HMM E-Value=2.8e-17)
Length = 1775
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = -1
Query: 412 IREPNTPPLVMVKLPPVRSSTV-SLPSHPLTASSLIFFSMSAMPRVSTSRRTGVPGRA 242
I +P L P SS V + P PLTA++ + F + + ++ + G+P R+
Sbjct: 1506 ITDPIQSCLSPFNFPNTESSLVYTKPQRPLTANTFVTFQTTQVEQLVKTHNEGLPRRS 1563
>SB_45340| Best HMM Match : RVT_1 (HMM E-Value=1.2e-15)
Length = 447
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 606 RRVCCWTCSSLSFTCTVDRIRHYRLLRQL 692
RR+CC T F+ +DR+ H RLL +L
Sbjct: 76 RRICCTTLLQ-DFSKALDRVPHRRLLYKL 103
>SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1019
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/57 (31%), Positives = 32/57 (56%)
Frame = +1
Query: 136 AVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTPRGLVRRFCVMSIPSAWQTSRR 306
A++ A+K+ PE+ +I+ D+ + M P V+RFC+ +PS+ TSR+
Sbjct: 333 ALLRAVKK-PELAKNINADEAAA-----LGMPARLPMNYVQRFCLCRVPSS--TSRQ 381
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,314,594
Number of Sequences: 59808
Number of extensions: 524377
Number of successful extensions: 1756
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1750
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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