Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0387
         (694 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   4.8  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   4.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.4  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           21   8.4  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           21   8.4  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   8.4  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 360 LTGGNFTITNGGVFGSLMSTPIINPPQ 440
           LT   F IT   + GS++ TP+   P+
Sbjct: 738 LTDFGFCITEVMMLGSIVGTPVHMAPE 764


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 360 LTGGNFTITNGGVFGSLMSTPIINPPQ 440
           LT   F IT   + GS++ TP+   P+
Sbjct: 776 LTDFGFCITEVMMLGSIVGTPVHMAPE 802


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
 Frame = +3

Query: 177 FYRRR*RGLPQLFRRQHGGFYAARPGTPVLRDVDTLGMADIEK-KIKELAVKGCDGKLTV 353
           FY    R L QL   +  G         +L D+  L + ++ + K++ +     +  + +
Sbjct: 469 FYNGSFRNLDQLTGLRLIGNDIGNLSRGMLWDLPNLQILNLARNKVQHVERYAFERNMRL 528

Query: 354 EDLT-GGNFTITNGGVFGSLMSTPIINPPQSAI 449
           E +   GNF     GVF S+ S  ++N  ++ I
Sbjct: 529 EAIRLDGNFLSDINGVFTSIASLLLLNLSENHI 561


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 13/57 (22%), Positives = 21/57 (36%)
 Frame = -3

Query: 575 GSPRIRDHRSDGDRRTAPGTSSEDLNLTIHRHRTIFDSVHTQNCALRRVDDRRRHQG 405
           G+ R+    SD  R       S   + ++H HR      H  N  L+  +   +  G
Sbjct: 17  GASRVMVSNSDRVRGNGNAIVSNSASNSVHGHREGLGRRHRYNFQLKPYNPEHKPPG 73


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 13/57 (22%), Positives = 21/57 (36%)
 Frame = -3

Query: 575 GSPRIRDHRSDGDRRTAPGTSSEDLNLTIHRHRTIFDSVHTQNCALRRVDDRRRHQG 405
           G+ R+    SD  R       S   + ++H HR      H  N  L+  +   +  G
Sbjct: 18  GASRVMVSNSDRVRGNGNAIVSNSASNSVHGHREGLGRRHRYNFQLKPYNPEHKPPG 74


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -3

Query: 575 GSPRIRDHRSDGDRRTAPG 519
           GSP ++ HRS     T  G
Sbjct: 276 GSPPVKQHRSSSASTTCSG 294


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,875
Number of Sequences: 438
Number of extensions: 4359
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)