Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0387
(694 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g55070.1 68418.m06864 2-oxoacid dehydrogenase family protein ... 113 1e-25
At4g26910.3 68417.m03871 2-oxoacid dehydrogenase family protein ... 108 3e-24
At4g26910.2 68417.m03873 2-oxoacid dehydrogenase family protein ... 108 3e-24
At4g26910.1 68417.m03872 2-oxoacid dehydrogenase family protein ... 108 3e-24
At1g54220.1 68414.m06182 dihydrolipoamide S-acetyltransferase, p... 64 1e-10
At3g13930.1 68416.m01759 dihydrolipoamide S-acetyltransferase, p... 62 4e-10
At3g52200.1 68416.m05733 dihydrolipoamide S-acetyltransferase, p... 55 5e-08
At3g06850.2 68416.m00813 branched chain alpha-keto acid dehydrog... 55 5e-08
At3g06850.1 68416.m00812 branched chain alpha-keto acid dehydrog... 55 5e-08
At3g25860.1 68416.m03222 dihydrolipoamide S-acetyltransferase (L... 49 3e-06
At1g34430.1 68414.m04277 dihydrolipoamide S-acetyltransferase, p... 42 3e-04
At3g48060.1 68416.m05240 bromo-adjacent homology (BAH) domain-co... 29 2.9
At3g48050.2 68416.m05239 bromo-adjacent homology (BAH) domain-co... 29 3.9
At3g48050.1 68416.m05238 bromo-adjacent homology (BAH) domain-co... 29 3.9
At2g35640.1 68415.m04371 hydroxyproline-rich glycoprotein family... 29 3.9
At5g59550.1 68418.m07462 zinc finger (C3HC4-type RING finger) fa... 28 5.1
At3g12100.1 68416.m01506 cation efflux family protein / metal to... 28 5.1
At3g63140.1 68416.m07091 mRNA-binding protein, putative similar ... 27 8.9
At1g29090.1 68414.m03561 peptidase C1A papain family protein con... 27 8.9
>At5g55070.1 68418.m06864 2-oxoacid dehydrogenase family protein
similar to SP|Q01205 Dihydrolipoamide
succinyltransferase component of 2-oxoglutarate
dehydrogenase complex, mitochondrial precursor (EC
2.3.1.61) {Rattus norvegicus}; contains Pfam profiles
PF00198: 2-oxo acid dehydrogenases acyltransferase
(catalytic domain), PF00364: Biotin-requiring enzyme
Length = 464
Score = 113 bits (271), Expect = 1e-25
Identities = 49/81 (60%), Positives = 64/81 (79%)
Frame = +3
Query: 258 PVLRDVDTLGMADIEKKIKELAVKGCDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPP 437
PV+RD D + ADIEK I LA K +G ++++++ GG+FT++NGGV+GSL+STPIINPP
Sbjct: 341 PVIRDADKMNFADIEKTINGLAKKATEGTISIDEMAGGSFTVSNGGVYGSLISTPIINPP 400
Query: 438 QSAILGMHAIKDRPMAVNGQV 500
QSAILGMH+I RPM V G V
Sbjct: 401 QSAILGMHSIVQRPMVVGGSV 421
Score = 107 bits (256), Expect = 9e-24
Identities = 47/85 (55%), Positives = 66/85 (77%)
Frame = +1
Query: 1 KNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNAS 180
+N+ A+LTTFNEV+M +M LR QY +AF ++HG++LG MS ++KA V AL+ P VNA
Sbjct: 255 QNTFALLTTFNEVDMTNLMKLRSQYKDAFLEKHGVKLGLMSGFIKAAVSALQHQPVVNAV 314
Query: 181 IDGDDVVYHNYFDVSMAVSTPRGLV 255
IDGDD++Y +Y D+S+AV T +GLV
Sbjct: 315 IDGDDIIYRDYVDISIAVGTSKGLV 339
Score = 66.1 bits (154), Expect = 2e-11
Identities = 29/40 (72%), Positives = 36/40 (90%)
Frame = +2
Query: 509 PMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLLDV 628
PMMY+AL+YDHRLIDGRE+V FL IK+++EDP RLLLD+
Sbjct: 425 PMMYVALTYDHRLIDGREAVYFLRRIKDVVEDPQRLLLDI 464
>At4g26910.3 68417.m03871 2-oxoacid dehydrogenase family protein
similar to SP|P36957 Dihydrolipoamide
succinyltransferase component of 2-oxoglutarate
dehydrogenase complex, mitochondrial precursor (EC
2.3.1.61) {Homo sapiens}; contains Pfam profiles
PF00198: 2-oxo acid dehydrogenases acyltransferase
(catalytic domain), PF00364: Biotin-requiring enzyme
Length = 365
Score = 108 bits (260), Expect = 3e-24
Identities = 47/81 (58%), Positives = 63/81 (77%)
Frame = +3
Query: 258 PVLRDVDTLGMADIEKKIKELAVKGCDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPP 437
PV+R D + A+IEK I LA K +G ++++++ GG+FT++NGGV+GSL+STPIINPP
Sbjct: 242 PVIRGADKMNFAEIEKTINSLAKKANEGTISIDEMAGGSFTVSNGGVYGSLISTPIINPP 301
Query: 438 QSAILGMHAIKDRPMAVNGQV 500
QSAILGMH+I RPM V G V
Sbjct: 302 QSAILGMHSIVSRPMVVGGSV 322
Score = 107 bits (257), Expect = 7e-24
Identities = 47/85 (55%), Positives = 66/85 (77%)
Frame = +1
Query: 1 KNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNAS 180
+N+ A+LTTFNEV+M +M LR QY +AF ++HG++LG MS ++KA V AL+ P VNA
Sbjct: 156 QNTFALLTTFNEVDMTNLMKLRSQYKDAFYEKHGVKLGLMSGFIKAAVSALQHQPVVNAV 215
Query: 181 IDGDDVVYHNYFDVSMAVSTPRGLV 255
IDGDD++Y +Y D+S+AV T +GLV
Sbjct: 216 IDGDDIIYRDYVDISIAVGTSKGLV 240
Score = 65.7 bits (153), Expect = 3e-11
Identities = 28/40 (70%), Positives = 36/40 (90%)
Frame = +2
Query: 509 PMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLLDV 628
PMMY+AL+YDHRLIDGRE+V FL +K+++EDP RLLLD+
Sbjct: 326 PMMYVALTYDHRLIDGREAVYFLRRVKDVVEDPQRLLLDI 365
>At4g26910.2 68417.m03873 2-oxoacid dehydrogenase family protein
similar to SP|P36957 Dihydrolipoamide
succinyltransferase component of 2-oxoglutarate
dehydrogenase complex, mitochondrial precursor (EC
2.3.1.61) {Homo sapiens}; contains Pfam profiles
PF00198: 2-oxo acid dehydrogenases acyltransferase
(catalytic domain), PF00364: Biotin-requiring enzyme
Length = 463
Score = 108 bits (260), Expect = 3e-24
Identities = 47/81 (58%), Positives = 63/81 (77%)
Frame = +3
Query: 258 PVLRDVDTLGMADIEKKIKELAVKGCDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPP 437
PV+R D + A+IEK I LA K +G ++++++ GG+FT++NGGV+GSL+STPIINPP
Sbjct: 340 PVIRGADKMNFAEIEKTINSLAKKANEGTISIDEMAGGSFTVSNGGVYGSLISTPIINPP 399
Query: 438 QSAILGMHAIKDRPMAVNGQV 500
QSAILGMH+I RPM V G V
Sbjct: 400 QSAILGMHSIVSRPMVVGGSV 420
Score = 107 bits (257), Expect = 7e-24
Identities = 47/85 (55%), Positives = 66/85 (77%)
Frame = +1
Query: 1 KNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNAS 180
+N+ A+LTTFNEV+M +M LR QY +AF ++HG++LG MS ++KA V AL+ P VNA
Sbjct: 254 QNTFALLTTFNEVDMTNLMKLRSQYKDAFYEKHGVKLGLMSGFIKAAVSALQHQPVVNAV 313
Query: 181 IDGDDVVYHNYFDVSMAVSTPRGLV 255
IDGDD++Y +Y D+S+AV T +GLV
Sbjct: 314 IDGDDIIYRDYVDISIAVGTSKGLV 338
Score = 65.7 bits (153), Expect = 3e-11
Identities = 28/40 (70%), Positives = 36/40 (90%)
Frame = +2
Query: 509 PMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLLDV 628
PMMY+AL+YDHRLIDGRE+V FL +K+++EDP RLLLD+
Sbjct: 424 PMMYVALTYDHRLIDGREAVYFLRRVKDVVEDPQRLLLDI 463
>At4g26910.1 68417.m03872 2-oxoacid dehydrogenase family protein
similar to SP|P36957 Dihydrolipoamide
succinyltransferase component of 2-oxoglutarate
dehydrogenase complex, mitochondrial precursor (EC
2.3.1.61) {Homo sapiens}; contains Pfam profiles
PF00198: 2-oxo acid dehydrogenases acyltransferase
(catalytic domain), PF00364: Biotin-requiring enzyme
Length = 464
Score = 108 bits (260), Expect = 3e-24
Identities = 47/81 (58%), Positives = 63/81 (77%)
Frame = +3
Query: 258 PVLRDVDTLGMADIEKKIKELAVKGCDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPP 437
PV+R D + A+IEK I LA K +G ++++++ GG+FT++NGGV+GSL+STPIINPP
Sbjct: 341 PVIRGADKMNFAEIEKTINSLAKKANEGTISIDEMAGGSFTVSNGGVYGSLISTPIINPP 400
Query: 438 QSAILGMHAIKDRPMAVNGQV 500
QSAILGMH+I RPM V G V
Sbjct: 401 QSAILGMHSIVSRPMVVGGSV 421
Score = 107 bits (257), Expect = 7e-24
Identities = 47/85 (55%), Positives = 66/85 (77%)
Frame = +1
Query: 1 KNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNAS 180
+N+ A+LTTFNEV+M +M LR QY +AF ++HG++LG MS ++KA V AL+ P VNA
Sbjct: 255 QNTFALLTTFNEVDMTNLMKLRSQYKDAFYEKHGVKLGLMSGFIKAAVSALQHQPVVNAV 314
Query: 181 IDGDDVVYHNYFDVSMAVSTPRGLV 255
IDGDD++Y +Y D+S+AV T +GLV
Sbjct: 315 IDGDDIIYRDYVDISIAVGTSKGLV 339
Score = 65.7 bits (153), Expect = 3e-11
Identities = 28/40 (70%), Positives = 36/40 (90%)
Frame = +2
Query: 509 PMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLLDV 628
PMMY+AL+YDHRLIDGRE+V FL +K+++EDP RLLLD+
Sbjct: 425 PMMYVALTYDHRLIDGREAVYFLRRVKDVVEDPQRLLLDI 464
>At1g54220.1 68414.m06182 dihydrolipoamide S-acetyltransferase,
putative similar to dihydrolipoamide S-acetyltransferase
GI:5669871 [Zea mays]; contains Pfam profiles PF00198:
2-oxo acid dehydrogenases acyltransferase (catalytic
domain), PF00364: Biotin-requiring enzyme, PF02817: e3
binding domain
Length = 539
Score = 63.7 bits (148), Expect = 1e-10
Identities = 31/80 (38%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Frame = +3
Query: 258 PVLRDVDTLGMADIEKKIKELAVKGCDGKLTVEDLTGGNFTITN-GGVFGSLMSTPIINP 434
PV++D D G++ I ++++ LA K + L ED GG FT++N GG FG ++NP
Sbjct: 415 PVVKDADRKGLSTIGEEVRLLAQKAKENSLKPEDYEGGTFTVSNLGGPFGIKQFCAVVNP 474
Query: 435 PQSAILGMHAIKDRPMAVNG 494
PQ+AIL + + + R + NG
Sbjct: 475 PQAAILAVGSAEKRVVPGNG 494
Score = 30.7 bits (66), Expect = 0.96
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 515 MYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLL 622
M + LS DHR++DG +L K +E+P +LL
Sbjct: 504 MPVTLSCDHRVVDGAIGAEWLKAFKGYIENPKSMLL 539
>At3g13930.1 68416.m01759 dihydrolipoamide S-acetyltransferase,
putative similar to dihydrolipoamide S-acetyltransferase
[Zea mays] GI:5669871; contains Pfam profiles PF00198:
2-oxo acid dehydrogenases acyltransferase (catalytic
domain), PF00364: Biotin-requiring enzyme, PF02817: e3
binding domain
Length = 539
Score = 61.7 bits (143), Expect = 4e-10
Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Frame = +3
Query: 258 PVLRDVDTLGMADIEKKIKELAVKGCDGKLTVEDLTGGNFTITN-GGVFGSLMSTPIINP 434
PV++D D G++ I ++++ LA K + L ED GG FT++N GG FG +INP
Sbjct: 415 PVVKDADKKGLSTIGEEVRFLAQKAKENSLKPEDYEGGTFTVSNLGGPFGIKQFCAVINP 474
Query: 435 PQSAILGMHAIKDRPMAVNG 494
PQ+AIL + + + R + G
Sbjct: 475 PQAAILAIGSAEKRVVPGTG 494
Score = 30.7 bits (66), Expect = 0.96
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 515 MYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLL 622
M + LS DHR+IDG +L K +E P +LL
Sbjct: 504 MSVTLSCDHRVIDGAIGAEWLKAFKGYIETPESMLL 539
>At3g52200.1 68416.m05733 dihydrolipoamide S-acetyltransferase,
putative similar to dihydrolipoamide acetyltransferase
(E2) subunit of PDC [Arabidopsis thaliana] GI:559395;
contains Pfam profiles PF00198: 2-oxo acid
dehydrogenases acyltransferase (catalytic domain),
PF00364: Biotin-requiring enzyme, PF02817: e3 binding
domain; supporting cDNA
gi|5881964|gb|AF066080.1|AF066080
Length = 637
Score = 54.8 bits (126), Expect = 5e-08
Identities = 26/68 (38%), Positives = 41/68 (60%)
Frame = +3
Query: 255 TPVLRDVDTLGMADIEKKIKELAVKGCDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINP 434
TP++++ D ++ I ++KELA K GKL + GG F+I+N G++ IINP
Sbjct: 510 TPIIKNADQKSISAISLEVKELAQKARSGKLAPHEFQGGTFSISNLGMYPVDNFCAIINP 569
Query: 435 PQSAILGM 458
PQ+ IL +
Sbjct: 570 PQAGILAV 577
Score = 43.6 bits (98), Expect = 1e-04
Identities = 23/77 (29%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Frame = +1
Query: 31 NEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNASIDGD--DVVY 204
++V + P++ RK+ ++ HG+++ +KAV AL+ + NA D + D+V
Sbjct: 437 SDVVLDPLLAFRKE----LQENHGVKVSVNDIVIKAVAVALRNVRQANAFWDAEKGDIVM 492
Query: 205 HNYFDVSMAVSTPRGLV 255
+ D+S+AV+T +GL+
Sbjct: 493 CDSVDISIAVATEKGLM 509
Score = 33.5 bits (73), Expect = 0.14
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +2
Query: 515 MYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLL 622
M + LS DHR+ DG+ F+ ++ ED RLLL
Sbjct: 602 MNVTLSADHRIFDGQVGASFMSELRSNFEDVRRLLL 637
>At3g06850.2 68416.m00813 branched chain alpha-keto acid
dehydrogenase E2 subunit (din3) identical to branched
chain alpha-keto acid dehydrogenase E2 subunit (din3)
[Arabidopsis thaliana] GI:7021284
Length = 483
Score = 54.8 bits (126), Expect = 5e-08
Identities = 24/74 (32%), Positives = 43/74 (58%)
Frame = +3
Query: 258 PVLRDVDTLGMADIEKKIKELAVKGCDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPP 437
P +++V +L + +I K++ L + KL ED+TGG T++N G G +P++N P
Sbjct: 358 PNIKNVQSLSLLEITKELSRLQHLAANNKLNPEDVTGGTITLSNIGAIGGKFGSPLLNLP 417
Query: 438 QSAILGMHAIKDRP 479
+ AI+ + I+ P
Sbjct: 418 EVAIIALGRIEKVP 431
Score = 33.5 bits (73), Expect = 0.14
Identities = 19/76 (25%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Frame = +1
Query: 34 EVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNASIDGD--DVVYH 207
E+N +++L KQ+ + I+ F+ +K++ AL +YP VN+ + + +++
Sbjct: 282 EINCDSLVEL-KQFFKENNTDSTIKHTFLPTLIKSLSMALTKYPFVNSCFNAESLEIILK 340
Query: 208 NYFDVSMAVSTPRGLV 255
++ +A++T GLV
Sbjct: 341 GSHNIGVAMATEHGLV 356
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 512 MMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLLDV 628
+M + ++ DHR++DG F KE +E P L+L +
Sbjct: 444 IMMVNIAADHRVLDGATVARFCCQWKEYVEKPELLMLQM 482
>At3g06850.1 68416.m00812 branched chain alpha-keto acid
dehydrogenase E2 subunit (din3) identical to branched
chain alpha-keto acid dehydrogenase E2 subunit (din3)
[Arabidopsis thaliana] GI:7021284
Length = 483
Score = 54.8 bits (126), Expect = 5e-08
Identities = 24/74 (32%), Positives = 43/74 (58%)
Frame = +3
Query: 258 PVLRDVDTLGMADIEKKIKELAVKGCDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPP 437
P +++V +L + +I K++ L + KL ED+TGG T++N G G +P++N P
Sbjct: 358 PNIKNVQSLSLLEITKELSRLQHLAANNKLNPEDVTGGTITLSNIGAIGGKFGSPLLNLP 417
Query: 438 QSAILGMHAIKDRP 479
+ AI+ + I+ P
Sbjct: 418 EVAIIALGRIEKVP 431
Score = 33.5 bits (73), Expect = 0.14
Identities = 19/76 (25%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Frame = +1
Query: 34 EVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNASIDGD--DVVYH 207
E+N +++L KQ+ + I+ F+ +K++ AL +YP VN+ + + +++
Sbjct: 282 EINCDSLVEL-KQFFKENNTDSTIKHTFLPTLIKSLSMALTKYPFVNSCFNAESLEIILK 340
Query: 208 NYFDVSMAVSTPRGLV 255
++ +A++T GLV
Sbjct: 341 GSHNIGVAMATEHGLV 356
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 512 MMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLLDV 628
+M + ++ DHR++DG F KE +E P L+L +
Sbjct: 444 IMMVNIAADHRVLDGATVARFCCQWKEYVEKPELLMLQM 482
>At3g25860.1 68416.m03222 dihydrolipoamide S-acetyltransferase
(LTA2) identical to dihydrolipoamide S-acetyltransferase
(LTA2) [Arabidopsis thaliana] GI:5881963
Length = 480
Score = 48.8 bits (111), Expect = 3e-06
Identities = 28/77 (36%), Positives = 41/77 (53%)
Frame = +3
Query: 255 TPVLRDVDTLGMADIEKKIKELAVKGCDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINP 434
TPVL+D D L + + +K KEL K +L + G FT++N G+FG I+ P
Sbjct: 357 TPVLQDADKLDLYLLSQKWKELVGKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPP 416
Query: 435 PQSAILGMHAIKDRPMA 485
Q AI+ + A K +A
Sbjct: 417 GQGAIMAVGASKPTVVA 433
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +2
Query: 515 MYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLL 622
M + ++ DHR++ G + FL T +++E+P L L
Sbjct: 445 MLVNVTADHRIVYGADLAAFLQTFAKIIENPDSLTL 480
>At1g34430.1 68414.m04277 dihydrolipoamide S-acetyltransferase,
putative similar to dihydrolipoamide S-acetyltransferase
(LTA2) [Arabidopsis thaliana] GI:5881963; contains Pfam
profiles PF00198: 2-oxo acid dehydrogenases
acyltransferase (catalytic domain), PF00364:
Biotin-requiring enzyme, PF02817: e3 binding domain
Length = 465
Score = 42.3 bits (95), Expect = 3e-04
Identities = 23/70 (32%), Positives = 38/70 (54%)
Frame = +3
Query: 255 TPVLRDVDTLGMADIEKKIKELAVKGCDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINP 434
TPVL++ D + + + +K KEL K +L ++ G FT++N G+FG I+ P
Sbjct: 342 TPVLQNADKVDIYSLSRKWKELVDKARAKQLQPQEYNTGTFTLSNLGMFGVDRFDAILPP 401
Query: 435 PQSAILGMHA 464
AI+ + A
Sbjct: 402 GTGAIMAVGA 411
Score = 33.5 bits (73), Expect = 0.14
Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Frame = +1
Query: 133 KAVVEALKRYPEVNASI-DGDDVVYHNYFDVSMAVSTPRGLV 255
KA AL ++P VN+S DG+ VY++ +V++AV+ GL+
Sbjct: 300 KATALALAKHPVVNSSCRDGNSFVYNSSINVAVAVAIDGGLI 341
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 515 MYLALSYDHRLIDGRESVGFLVTIKELLEDPTRL 616
M + ++ DHR+I G + FL T+ ++EDP L
Sbjct: 430 MQVNVTADHRVIYGADLAQFLQTLASIIEDPKDL 463
>At3g48060.1 68416.m05240 bromo-adjacent homology (BAH)
domain-containing protein contains Pfam profile PF01426:
BAH domain
Length = 1611
Score = 29.1 bits (62), Expect = 2.9
Identities = 20/57 (35%), Positives = 29/57 (50%)
Frame = +1
Query: 40 NMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNASIDGDDVVYHN 210
N+K L ++ +RHG L M+ A++E+ RY E NAS+ G D V N
Sbjct: 726 NVKATSSLGNEFKSG--ERHGGTLSSMN----ALIESCVRYSETNASLAGSDDVGMN 776
>At3g48050.2 68416.m05239 bromo-adjacent homology (BAH)
domain-containing protein contains Pfam profile PF01426:
BAH domain
Length = 1613
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +1
Query: 91 KRHGIRLGFMSFYVKAVVEALKRYPEVNASIDGDDVVYHN 210
+RHG L M+ A++E+ RY E NAS+ G D V N
Sbjct: 741 ERHGGTLSSMN----ALIESCVRYSETNASLAGSDDVGMN 776
>At3g48050.1 68416.m05238 bromo-adjacent homology (BAH)
domain-containing protein contains Pfam profile PF01426:
BAH domain
Length = 1613
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +1
Query: 91 KRHGIRLGFMSFYVKAVVEALKRYPEVNASIDGDDVVYHN 210
+RHG L M+ A++E+ RY E NAS+ G D V N
Sbjct: 741 ERHGGTLSSMN----ALIESCVRYSETNASLAGSDDVGMN 776
>At2g35640.1 68415.m04371 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 340
Score = 28.7 bits (61), Expect = 3.9
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Frame = -1
Query: 394 PPLVMVKLPPV--RSSTVSLPSHPLTASSLIFFSMSAMPRV---STSRRTGVPG 248
P +++ LPP +S ++SLPS P S F + P V ST RR PG
Sbjct: 188 PTTIVLSLPPPPPQSLSLSLPSPPQPPPSSSFHAEPIPPTVGTSSTKRRRTTPG 241
>At5g59550.1 68418.m07462 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 407
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = -3
Query: 566 RIRDHRSDGDRRTAPGTSSEDLNLTIHRHRTIFDSVHTQNCALRRVDDRRRHQGTEHTTV 387
R+R +RS A TSS++L+L I + D N +RR R R ++V
Sbjct: 349 RVRPNRSSSSSSAAISTSSDNLDLNIEVESRVLD---RSNSVMRRYFRRNRSNRDSSSSV 405
>At3g12100.1 68416.m01506 cation efflux family protein / metal
tolerance protein, putative member of the cation
diffusion facilitator (CDF) family, or cation efflux
(CE) family, PMID:11500563
Length = 393
Score = 28.3 bits (60), Expect = 5.1
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Frame = +1
Query: 58 DLRKQYGEAFEKRHGIRLGFMSFYVKA----VVEALKRYPEVNASIDGDDVVYHNYFDVS 225
D R Y +F++ HG R ++ K V ++ P++ S+DG DV + DV
Sbjct: 29 DRRLAYSRSFQQSHGPRTPAVTEAAKPFLDRTVSSIDMPPDIY-SVDGSDVFFGEGKDVD 87
Query: 226 MA 231
MA
Sbjct: 88 MA 89
>At3g63140.1 68416.m07091 mRNA-binding protein, putative similar to
mRNA binding protein precursor (GI:26453355)
[Lycopersicon esculentum]
Length = 406
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -1
Query: 394 PPLVMVKLPPVRSSTVSLPSHPLTASSLIFFSMSAMPRVSTSRRT 260
P L LP SS SL S ++SSL+ FS+ R+S + T
Sbjct: 26 PSLHRFSLPSSSSSFSSLSSSSSSSSSLLTFSLRTSRRLSPQKFT 70
>At1g29090.1 68414.m03561 peptidase C1A papain family protein
contains similarity to cysteine protease SPCP1
GI:13491750 from [Ipomoea batatas]; contains Pfam
profile PF00112: Papain family cysteine protease
Length = 355
Score = 27.5 bits (58), Expect = 8.9
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 380 HHQRWCVRFPDVYAD 424
HHQ+W RF VY+D
Sbjct: 46 HHQQWMTRFSRVYSD 60
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,862,215
Number of Sequences: 28952
Number of extensions: 346765
Number of successful extensions: 1068
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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