Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0386
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    75   1e-14
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    30   0.40 
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    27   2.8  
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    27   2.8  
SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit L3|S...    25   8.6  

>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 74.9 bits (176), Expect = 1e-14
 Identities = 37/82 (45%), Positives = 50/82 (60%)
 Frame = +2

Query: 263 ILFFILHVGGVYGGYLFLFKAMWRTSIFAIFLYLCSGLGITAGAHRLWAHKSYKARLPLR 442
           +L F L +  +YG  +F      +T IFAI  Y  SGLGITAG HRLW+H++YKA+ PL 
Sbjct: 68  MLIFGLPMIAIYG--VFTTPLQTKTLIFAIIYYAYSGLGITAGYHRLWSHRAYKAKKPLE 125

Query: 443 ILLTIFNTIAFQDAVVDWARDH 508
             L      AF+ ++  W+RDH
Sbjct: 126 YFLAAGGAAAFEGSIRWWSRDH 147



 Score = 67.7 bits (158), Expect = 2e-12
 Identities = 24/72 (33%), Positives = 47/72 (65%)
 Frame = +1

Query: 514 HHKYSETDADPHNATRGFFFSHIGWLLLRKHPEIKAKGHTVDVNDLRNDPILRFQKKYYQ 693
           HH+Y++TD DP+N  +GF+++H+GW+++ ++P    +    DV+DL +DP + F  +++ 
Sbjct: 150 HHRYTDTDKDPYNVKKGFWYAHVGWMIILQNPRRIGRS---DVSDLNSDPFVMFNHRHFL 206

Query: 694 ILMPLACFIMPT 729
            +     FI P+
Sbjct: 207 PIASFMAFIFPS 218


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 232 RDLGRLCGKCDSVLYSACRWCLWRVLVPFQSHVEDFY 342
           R+   L  KC   L +  RWCL     P Q+H+++FY
Sbjct: 403 RNRDTLAAKCCVKLDAKYRWCLSG--TPIQNHIDEFY 437


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -1

Query: 311 TSTLHKHHRHAE*RTESHFPHNLPRS 234
           +S+ + HHR A+ +T+S  P N+P S
Sbjct: 121 SSSNYAHHRSADSQTKSALPPNVPAS 146


>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -3

Query: 261 TFPTQSSKVSSLLREVH 211
           TFP  SS +SS LRE+H
Sbjct: 557 TFPAASSNISSQLRELH 573


>SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit
           L3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 326

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 21/65 (32%), Positives = 28/65 (43%)
 Frame = -1

Query: 674 KRRIGSLRRSFTSTVWPLALISGCFLNNNQPMWEKKNPRVALWGSASVSEYLWCMHDHGP 495
           K+RIG L  S+   V   ALI    + N Q   EK      ++G   V EY+ C +   P
Sbjct: 51  KKRIG-LPESYPMKVLVQALIDKTVVQNPQYSNEKLWSIGKVFGDFYVLEYIKCKYPRLP 109

Query: 494 NPLRH 480
               H
Sbjct: 110 EEAVH 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,509,698
Number of Sequences: 5004
Number of extensions: 83606
Number of successful extensions: 223
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)