Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0386
(743 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0535 + 4234282-4235082 30 1.7
11_03_0072 + 9605273-9606814,9616982-9617016,9617271-9617348,961... 29 2.9
10_08_0445 + 17989438-17990895 29 2.9
04_01_0399 - 5214183-5214206,5215437-5215502,5219537-5219635,521... 29 3.9
11_01_0043 + 328272-328753,329233-329298,330082-330253,330357-33... 29 5.2
05_05_0270 - 23728986-23729267,23729575-23730120,23730207-237305... 29 5.2
02_05_0024 + 25152090-25153151,25153232-25154145,25154499-251547... 29 5.2
03_02_0101 - 5623661-5623669,5623756-5624408,5624504-5624640,562... 28 6.8
12_01_0857 - 8043765-8043839,8044215-8044497,8044578-8044748,804... 28 9.0
>11_01_0535 + 4234282-4235082
Length = 266
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +2
Query: 329 WRTSIFAIFLYLCSGLGITAGAHRLWAHKSYKARLP 436
W + +A FLY C LG A RLW + + P
Sbjct: 220 WTPAAWAFFLYTCVNLGPRARDQRLWYISKFGDKYP 255
>11_03_0072 +
9605273-9606814,9616982-9617016,9617271-9617348,
9617427-9617501,9617583-9617657,9617731-9617977,
9618070-9618313,9618852-9619309,9619388-9619675,
9619751-9619788,9619882-9620452
Length = 1216
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 349 HIFVLVFGIGYHSWRAQT-LGTQVL*SSAATENITHHIQYYRFSGCRSG 492
H+F F Y+ W + + G ++ A ENI + QY RF G ++G
Sbjct: 57 HLFESGFMPSYNCWTSHSEQGVEMEEDEAQDENIPNWAQYARFEGNQTG 105
>10_08_0445 + 17989438-17990895
Length = 485
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Frame = +3
Query: 174 ADANNL-PEDAPPHV--PPSAEKRPWK 245
A A N+ P +PPHV PP+ +RPW+
Sbjct: 407 ATATNMTPPPSPPHVRAPPAPARRPWR 433
>04_01_0399 -
5214183-5214206,5215437-5215502,5219537-5219635,
5219746-5219817,5219918-5220491,5220575-5220687,
5220842-5220941,5221059-5221181,5221268-5221335,
5221461-5221610,5221715-5221858,5222097-5222288,
5222710-5222794,5222892-5223043,5223138-5223296,
5223552-5223605,5223698-5223836,5223955-5224088,
5224200-5225117
Length = 1121
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +1
Query: 271 LYSACRWCLWRVLVPFQSHVEDFYIRHIFVLVFGIGYHSW 390
L S CRWCL P Q+++ED + F+ V G SW
Sbjct: 695 LTSHCRWCL--TGTPLQNNLEDLFSLLCFLHVEPWGDASW 732
>11_01_0043 +
328272-328753,329233-329298,330082-330253,330357-330565,
330779-330937,331279-331627
Length = 478
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -2
Query: 433 QPSFIGLVCPKSV-RASCDTQSRTQVQKYGEYRSPPHGFEKEQVPSINTTDMQNK 272
+P + GL C +CD R KY +R PHG +VP N + K
Sbjct: 120 RPLYSGLKCSFIFDEVACDKYGRNDT-KYQHWRWQPHGCNLPRVPGANWKTYREK 173
>05_05_0270 -
23728986-23729267,23729575-23730120,23730207-23730561,
23731147-23731442,23731665-23731714,23731802-23731904,
23732059-23732148,23732328-23732384,23732571-23732618,
23732725-23732753,23732940-23733087
Length = 667
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +3
Query: 183 NNLPEDAPPHVPPSAEKRPWKIVWEM*FCSLFCMSVVFMEGTCSF 317
+ LP + PPS EK + I W + +LFC+S SF
Sbjct: 78 DRLPVNDTNKFPPSIEKSAFAISWILFHMALFCISTAIKALFLSF 122
>02_05_0024 +
25152090-25153151,25153232-25154145,25154499-25154709,
25154757-25154921
Length = 783
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +3
Query: 453 PYSILSLFRMP*WIGPVIMHAPQIFRDRCGPPQRNPRILLFPHW 584
P + ++ R+ W+ ++ P I PP++ PRIL +P +
Sbjct: 360 PDLLQNVKRVSPWLVELVSSMPAINLSSFSPPRKKPRILAYPEF 403
>03_02_0101 -
5623661-5623669,5623756-5624408,5624504-5624640,
5626032-5626609
Length = 458
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 290 GVYGGYLFLFKAMWRTSIFAIFLYLCSGLGITAGAH 397
G GY L+ +W T + A+ L + LG+ G H
Sbjct: 97 GAAAGYQLLWLLLWATVMGALVQLLSARLGVATGKH 132
>12_01_0857 -
8043765-8043839,8044215-8044497,8044578-8044748,
8044826-8045670,8045828-8046262,8046339-8046563,
8046700-8046781,8046814-8047067
Length = 789
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = +3
Query: 105 NQYIVSVKMPPQRKQEASWVLYEADA--NNLPEDAPPHVPPSAEK 233
+Q +VS+ +++ E + Y+ D + + D+ PH+PPSA++
Sbjct: 437 HQTVVSLPPAVEQRDEDLQLQYDTDFWDDGMEVDSRPHLPPSAKR 481
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,413,902
Number of Sequences: 37544
Number of extensions: 577127
Number of successful extensions: 1605
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1605
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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