Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0386
         (743 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   4.0  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   5.3  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   7.0  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 183  WRRLRTIPTKPPVSFGEAF 127
            WR+ +  P  PP S G+A+
Sbjct: 1350 WRQQQPPPPPPPPSSGQAY 1368


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 606 MLPQQQPANVGKEES 562
           +LP  +PANV KE+S
Sbjct: 768 LLPVIKPANVNKEQS 782


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 177 DANNLPEDAPPHVPPSA 227
           D++  P+ APP  PPS+
Sbjct: 334 DSDTPPKPAPPPPPPSS 350


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = -2

Query: 550 CGGPHRSLNICGACM 506
           CGGP   L IC   M
Sbjct: 69  CGGPQNYLGICAEGM 83


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 242,237
Number of Sequences: 438
Number of extensions: 6754
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)