Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0385
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces pomb...    28   1.1  
SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom...    26   5.7  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    25   7.6  
SPMIT.09 |atp8||F0-ATPase subunit 8; similar to S. cerevisiae Q0...    25   7.6  
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl...    25   10.0 
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    25   10.0 
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ...    25   10.0 

>SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 334

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = -2

Query: 243 ITLYTPDSNGPFLSCTKKIYYFVDKRPLYTFTCIDRHNTILIIF-NIYGENAIALFLVYL 67
           +TLY  +    +L     ++ F+ K+PL    C     T L+ F  + G  ++   ++ L
Sbjct: 134 VTLYYLNYLTKYLELMDTVFLFLKKKPLAFLHCYHHGITALLCFTQLLGRTSVQWGVIGL 193

Query: 66  YYFIAVV-YKY 37
             ++ V+ Y Y
Sbjct: 194 NLYVHVIMYSY 204


>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 183 YFVDKRPLYTFTCIDR 136
           Y VDK P + FTCID+
Sbjct: 28  YAVDKYPDFHFTCIDK 43


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -1

Query: 295 SDIFCLFVILAYVSVTLHHFIHTGFEWTFFVVYQKNILF 179
           S I C FV++  + +T  H I T  +W +  V++  ILF
Sbjct: 321 SKILCTFVLVLSIGLTFSHGIKT--DW-YISVFRYLILF 356


>SPMIT.09 |atp8||F0-ATPase subunit 8; similar to S. cerevisiae
           Q0080|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 48

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 331 PGLIPFIYSWVCSDIFCLFVILAYVS 254
           P L+PF +  + S  F +F +L Y+S
Sbjct: 2   PQLVPFYFINILSFGFLIFTVLLYIS 27


>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +3

Query: 156 CIKVVYQQNNIFFWYTTKKVHSNPVCIK 239
           C  + +  NN  + Y+T     NP+C++
Sbjct: 460 CDSLSFSSNNSLYGYSTLLHPRNPICVR 487


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 491 ASFEISLRIPNYSPVYRLYN 432
           +S   +L++P+ S +YRLYN
Sbjct: 315 SSITANLKLPDNSRIYRLYN 334


>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
           Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 497

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 646 AVAFTTDAFYKLHCIFQTLLIDIPQ 572
           AV F  +A YKLH + Q L+ +IP+
Sbjct: 284 AVQFL-EAVYKLHIVVQLLMGEIPE 307


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,589,236
Number of Sequences: 5004
Number of extensions: 54788
Number of successful extensions: 151
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)