Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0385
         (676 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36073| Best HMM Match : 7tm_1 (HMM E-Value=6.7e-27)                 31   1.1  
SB_36071| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-27)                 31   1.1  
SB_58546| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_56071| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  

>SB_36073| Best HMM Match : 7tm_1 (HMM E-Value=6.7e-27)
          Length = 305

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -2

Query: 123 LIIFNIYGENAIALFLVYLYYFIAVVYKY 37
           L++  IY   A+ALFLV+   FI  VY Y
Sbjct: 135 LLVHKIYVSCAVALFLVFPLVFILFVYSY 163


>SB_36071| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-27)
          Length = 310

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -2

Query: 123 LIIFNIYGENAIALFLVYLYYFIAVVYKY 37
           L++  IY   A+ALFLV+   FI  VY Y
Sbjct: 141 LLVHKIYVSCAVALFLVFPLVFILFVYSY 169


>SB_58546| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 947

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 20/66 (30%), Positives = 29/66 (43%)
 Frame = -3

Query: 275 CDTCLCFGYFTSLYTHRIRMDLFCRVPKKYIILLINDLYTHSLV*IGTILF**YLIFMAK 96
           C  C+CFGYF   Y H +R      VP     LL+  +   ++   G +L        A 
Sbjct: 301 CMCCICFGYFVP-YVHLVRYAETLSVPLSEGALLLGYISISAI--FGKLLCGRVADIKAS 357

Query: 95  MLLHFF 78
           + L+FF
Sbjct: 358 LRLYFF 363


>SB_56071| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 856

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = -3

Query: 578 PTGQWCSRVALASRL*DCPSLRRPSNNRHASFEISLRIPNYSPVYRLYNISHTDDDKHYN 399
           P  +WC R A+  R  DCP+     +N   +   +    +   V+ +YN   +D D  Y 
Sbjct: 280 PRCRWCGRQAVHLRK-DCPAKNIQCHNCQKTGHFATVFQSAKQVHEVYNDEDSDFDTFYT 338

Query: 398 V 396
           +
Sbjct: 339 M 339


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,257,786
Number of Sequences: 59808
Number of extensions: 405276
Number of successful extensions: 786
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)