Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0385
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83104-7|CAH60780.1|  762|Caenorhabditis elegans Hypothetical pr...    31   0.99 
Z70685-2|CAA94606.2|  762|Caenorhabditis elegans Hypothetical pr...    31   0.99 
AL033514-24|CAA22108.1| 2121|Caenorhabditis elegans Hypothetical...    29   3.0  
AF000264-2|AAC71121.1|  761|Caenorhabditis elegans Half transpor...    29   3.0  
AC084159-14|AAK39369.2|  480|Caenorhabditis elegans Hypothetical...    28   5.3  

>Z83104-7|CAH60780.1|  762|Caenorhabditis elegans Hypothetical
           protein R07D5.2 protein.
          Length = 762

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -2

Query: 129 TILIIFNIYGENAIALFLVYLYYFIAVVYK 40
           TIL + NI G N IA    +LY+F+ ++Y+
Sbjct: 379 TILFVLNIMGSN-IAFMFSFLYFFVDLLYQ 407


>Z70685-2|CAA94606.2|  762|Caenorhabditis elegans Hypothetical
           protein R07D5.2 protein.
          Length = 762

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -2

Query: 129 TILIIFNIYGENAIALFLVYLYYFIAVVYK 40
           TIL + NI G N IA    +LY+F+ ++Y+
Sbjct: 379 TILFVLNIMGSN-IAFMFSFLYFFVDLLYQ 407


>AL033514-24|CAA22108.1| 2121|Caenorhabditis elegans Hypothetical
           protein Y75B8A.24 protein.
          Length = 2121

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 22/78 (28%), Positives = 31/78 (39%)
 Frame = -3

Query: 377 GIFVPHTLRDLPRERPRSHPVYILLGLFRHFLFICDTCLCFGYFTSLYTHRIRMDLFCRV 198
           G+ +P     L R +P S P   L  LFR F F C T L F   +S        +  C  
Sbjct: 748 GVLMPKIASLLRRMQPISEPTTKLRSLFRDFWFYC-TVLGFDVESSSLWPEEWYNAVCET 806

Query: 197 PKKYIILLINDLYTHSLV 144
             K  +L+  +     L+
Sbjct: 807 ATKTPVLIATENLRSELI 824


>AF000264-2|AAC71121.1|  761|Caenorhabditis elegans Half transporter
           (pgp related)protein 2 protein.
          Length = 761

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = -3

Query: 260 CFGYFTSLYTHRIRMDLF 207
           CF Y T+L T RIR+DLF
Sbjct: 260 CFDYATALVTLRIRLDLF 277


>AC084159-14|AAK39369.2|  480|Caenorhabditis elegans Hypothetical
           protein Y73B3A.6 protein.
          Length = 480

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -2

Query: 219 NGPFLSCTKKIY-YFVDKRPLYTFTCIDRHNTILIIFNIYGENAIALFLVYLYY 61
           NGP+ +  K    Y +  RP Y     +R+NTI++   +Y + + ALF  +L Y
Sbjct: 363 NGPWKTLIKNFTSYVMSFRPDYIIA--NRNNTIMMTSLLYHQVSAALFEPFLKY 414


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,205,006
Number of Sequences: 27780
Number of extensions: 298242
Number of successful extensions: 736
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)