Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0385
         (676 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g07520.1 68416.m00896 glutamate receptor family protein (GLR1...    30   1.6  
At2g40475.1 68415.m04995 expressed protein                             28   5.0  

>At3g07520.1 68416.m00896 glutamate receptor family protein (GLR1.4)
           plant glutamate receptor family, PMID:11379626
          Length = 861

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = -3

Query: 269 TCLCFGYFTSLYTHRIR----MDLFCRVPKKYIILLINDLYTHSLV*IGTI 129
           T LCFG+ T ++ HR R    M  F  +   + +L++   YT +L  + T+
Sbjct: 607 TLLCFGFSTLVFAHRERLQHNMSRFVVIVWIFAVLILTSNYTATLTSVMTV 657


>At2g40475.1 68415.m04995 expressed protein
          Length = 193

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 512 RPSNNRHASFEISLRIPNYSPVYRLYNISHTDDDK 408
           RP   +HA F  SLR+P  +P    Y+ S +  +K
Sbjct: 46  RPGTPKHALFSESLRLPPLTPPPSYYSSSSSSGNK 80


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,109,845
Number of Sequences: 28952
Number of extensions: 261754
Number of successful extensions: 580
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)