Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0384
         (689 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    27   2.6  
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch...    27   3.4  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    27   3.4  
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...    27   3.4  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.4  

>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/17 (58%), Positives = 11/17 (64%), Gaps = 1/17 (5%)
 Frame = -2

Query: 61   FFIVWFYPF-IYVFIHH 14
            FF+ WFYP   Y  IHH
Sbjct: 1315 FFLCWFYPIKFYKHIHH 1331


>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 679

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 274 C*GESQAAVYRKMRIKLILQIH 339
           C GESQ+ +Y+K  +K ++ +H
Sbjct: 208 CLGESQSTMYKKSGLKTLVTLH 229


>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1369

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -1

Query: 80   P*DNSPFFHCMVLSIYLCI 24
            P  N+PF+ C++L++ LCI
Sbjct: 1337 PVANAPFWICLILNVALCI 1355


>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 5   FEKMMDKYINKWIKPYNEKRESCLKDSRLTRSSL 106
           FEK   K   +W+  Y E   S  KD  + R S+
Sbjct: 134 FEKRRAKKFLEWVNNYREDDPSTYKDINIDRDSM 167


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -2

Query: 124  HKTDVAKGTPCQPTILKTTLPFFIVWFYPFIYVFIHHFFK 5
            + TD  K  P +PT    +L +F  +F  F+ V + H+F+
Sbjct: 979  YSTDYTKKNPKEPTADVNSLSYFEKFFVLFV-VNLRHYFQ 1017


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,557,680
Number of Sequences: 5004
Number of extensions: 47920
Number of successful extensions: 94
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)