Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0384
         (689 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44896| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.38 
SB_44895| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_687| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   6.2  

>SB_44896| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 292 LDSPPSIADVHYHNNHSPIDGPYAHLPTE 206
           +D P   + V +H  HSP+D PY H P +
Sbjct: 19  VDQPYCHSPVDHHYFHSPVDQPYCHSPVD 47



 Score = 31.1 bits (67), Expect = 0.88
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 292 LDSPPSIADVHYHNNHSPIDGPYAHLPTE 206
           +D P   + + +H  HSP+D PY H P +
Sbjct: 1   MDHPYCHSPMDHHYFHSPVDQPYCHSPVD 29



 Score = 28.3 bits (60), Expect = 6.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 259 YHNNHSPIDGPYAHLPTE 206
           +H  HSP+D PY H P +
Sbjct: 57  HHYFHSPVDQPYCHSPVD 74


>SB_44895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 237

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 292 LDSPPSIADVHYHNNHSPIDGPYAHLPTE 206
           +D P   + V +   HSP+D PY H P +
Sbjct: 133 VDRPYCYSPVDHPYCHSPVDRPYCHSPVD 161


>SB_687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 579

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 461 LFRSSL*PANKTCVKESVLKNSKWINDEHSL*KN 562
           +F SSL     T V  +VLK S   ND+HS+ +N
Sbjct: 25  MFPSSLEETKSTTVTNTVLKESTPENDKHSVVRN 58


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,728,629
Number of Sequences: 59808
Number of extensions: 309355
Number of successful extensions: 562
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)