Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0384
         (689 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    25   0.68 
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    25   0.68 
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          23   2.7  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   3.6  

>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 328 LQIHFWNISIV*YRIVYWKYVYFFNSYYKQNICCQFFVSFF 450
           L+I+ WN  I+   I++  Y   F    K NI  Q+F++FF
Sbjct: 91  LKIYKWNNQIL--HILWTSYKKVF---MKDNILRQYFITFF 126


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 328 LQIHFWNISIV*YRIVYWKYVYFFNSYYKQNICCQFFVSFF 450
           L+I+ WN  I+   I++  Y   F    K NI  Q+F++FF
Sbjct: 74  LKIYKWNNQIL--HILWTSYKKVF---MKDNILRQYFITFF 109


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = -2

Query: 514 NRFLNARFVCGLKTRSKKCINEKKRQKTDNKYFVYXXXXXNIHTS 380
           NR +N+       T+    + EK+ + T+ K  V+       HTS
Sbjct: 86  NRTINSVVYIEQLTKLNNAVEEKRPELTNRKSVVFHHDNARPHTS 130


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = -2

Query: 514 NRFLNARFVCGLKTRSKKCINEKKRQKTDNKYFVYXXXXXNIHTS 380
           NR +N+       T+    + EK+ + T+ K  V+       HTS
Sbjct: 208 NRTINSVVYIEQLTKLNNAVEEKRPELTNRKGVVFHHDNARPHTS 252


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,145
Number of Sequences: 438
Number of extensions: 3501
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)