Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0382
         (744 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory recept...    23   2.0  
AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory recept...    23   2.0  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   3.4  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    23   3.4  

>AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory receptor
           candidate 56 protein.
          Length = 358

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 464 HKHSLFASIYIHISRFITIEVKLLTPINKSSIIQY 568
           +KH L+ +I IH+S  +TI   L   I   +  QY
Sbjct: 137 YKH-LYVNILIHLSGLVTIVATLTVTIIFFASYQY 170


>AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory receptor
           candidate 21 protein.
          Length = 386

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 464 HKHSLFASIYIHISRFITIEVKLLTPINKSSIIQY 568
           +KH L+ +I IH+S  +TI   L   I   +  QY
Sbjct: 137 YKH-LYVNILIHLSGLVTIVATLTVTIIFFASYQY 170


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 725 IQIHTIL*RCKFCENTTKL 669
           + I T++ RCKF E  TKL
Sbjct: 735 VWICTLMNRCKFSEFMTKL 753



 Score = 21.4 bits (43), Expect = 7.9
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +2

Query: 71  LKTQTVTNRYSYIHYYLVNILFDFI*NCYFAS 166
           L+ Q   N  S  HY  V      + +CY AS
Sbjct: 511 LRVQRFNNYQSLAHYLRVFFTVFNVVHCYLAS 542


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +2

Query: 488 IYIHISRFITIEVKLLTPINKSSIIQYVNIKNYICHM 598
           I +H S  IT  ++L    +    +QY+ +   +CH+
Sbjct: 147 IRVHHSGSITRSIRLTITASCPMNLQYLPMDRQLCHI 183


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,360
Number of Sequences: 336
Number of extensions: 3783
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19819879
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)