Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0382
         (744 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0160 + 14247463-14247584,14247710-14247923,14250099-142502...    28   9.0  
01_01_0407 - 3067071-3070085                                           28   9.0  

>11_04_0160 +
           14247463-14247584,14247710-14247923,14250099-14250215,
           14251578-14251670,14251748-14251922,14252981-14253017,
           14253842-14253875,14254212-14254481,14255768-14255872,
           14256295-14256392,14256474-14256616,14257197-14257290,
           14257378-14257487,14258018-14258172,14258252-14258332,
           14258415-14258535,14259358-14259464,14259537-14259668,
           14261105-14261258,14264094-14264211,14264344-14264517,
           14264831-14264882,14265450-14265577,14265670-14265820,
           14265904-14266242
          Length = 1107

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 308 LTSPDPRSTWLGGNISNTIVNFSITAHEYLSKLSK 204
           L +P   + W G ++ + IV F IT H Y ++ S+
Sbjct: 886 LLNPSTFAGWFGRSLYHAIVVFLITVHAYANEKSE 920


>01_01_0407 - 3067071-3070085
          Length = 1004

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -3

Query: 742 NRFVTI-YKFTLYYRDVNSVKTQRNSF 665
           NRF +I +KFT Y  DV+  K  RN+F
Sbjct: 599 NRFSSIPFKFTNYLSDVSFFKAGRNNF 625


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,801,213
Number of Sequences: 37544
Number of extensions: 299221
Number of successful extensions: 465
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)