Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0382
         (744 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   5.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   5.3  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   5.3  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   5.3  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   5.3  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +2

Query: 488 IYIHISRFITIEVKLLTPINKSSIIQYVNIKNYICHM 598
           I IH S  IT  ++L    +    +QY  +   +CH+
Sbjct: 118 IRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHI 154


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +2

Query: 488 IYIHISRFITIEVKLLTPINKSSIIQYVNIKNYICHM 598
           I IH S  IT  ++L    +    +QY  +   +CH+
Sbjct: 118 IRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHI 154


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -2

Query: 173 IFMMQNNSSR*SRTKY*LNSNGYMNIYLSQSVFLN 69
           I  + NN+   +  KY  N+N Y N   ++ ++ N
Sbjct: 81  ISSLSNNTIHNNNYKYNYNNNNYNNNNYNKKLYYN 115


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -2

Query: 173 IFMMQNNSSR*SRTKY*LNSNGYMNIYLSQSVFLN 69
           I  + NN+   +  KY  N+N Y N   ++ ++ N
Sbjct: 81  ISSLSNNTIHNNNYKYNYNNNNYNNNNYNKKLYYN 115


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +2

Query: 488 IYIHISRFITIEVKLLTPINKSSIIQYVNIKNYICHM 598
           I IH S  IT  ++L    +    +QY  +   +CH+
Sbjct: 57  IRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHI 93


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,247
Number of Sequences: 438
Number of extensions: 4059
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)