Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0381
(739 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25 |Schiz... 44 2e-05
SPBC16E9.09c |||COPII vesicle coat component Erp5/Erp6|Schizosac... 33 0.042
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 31 0.13
SPAC521.02 |||WLM domain protein|Schizosaccharomyces pombe|chr 1... 29 0.52
SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24 |Schiz... 29 0.69
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 26 6.4
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom... 25 8.5
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory... 25 8.5
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 25 8.5
>SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 44.0 bits (99), Expect = 2e-05
Identities = 21/55 (38%), Positives = 31/55 (56%)
Frame = +3
Query: 516 LKPMEVELKRLEDLSEAIVQDFTLMRKREEEMRDTNESTNNRVLFFSIFSMACLF 680
L+P+E +++R D E I ++ RE R+TNESTN RV F+ + LF
Sbjct: 141 LEPVEADIRRARDFIEEIKGKIYYLQAREARFRNTNESTNERVKNFAYLTFISLF 195
Score = 37.9 bits (84), Expect = 0.001
Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 7/158 (4%)
Frame = +1
Query: 286 GQRVDYIIKDSKGHILSQKDTVTKGK-FSFVTENYDMFEVCFISKVPS---ERRGIPHLV 453
GQ + +I DS G+ S V K +F + M ++CF++ + E V
Sbjct: 60 GQTLSMMITDSSGNTHSSIQNVLGEKSVAFDVDASAMLDICFLNTLTPGAIESEHKKRSV 119
Query: 454 SLDIKIGIEAKTYEGIGEVQN*SQWKWN*RD*KTY-QKLSFKISHXXXXXXXX*EI--PM 624
L+ +G +A Y + + N + + R + + +++ KI +
Sbjct: 120 KLEFTVGADADDYSSLQKANNLEPVEADIRRARDFIEEIKGKIYYLQAREARFRNTNEST 179
Query: 625 NPRIIEFYSSVYSRWRASLGLATWQVLYLRRFFKAKKL 738
N R+ F Y + + L WQ+LYLR FF+ K L
Sbjct: 180 NERVKNF---AYLTFISLFVLVIWQILYLRSFFQRKHL 214
>SPBC16E9.09c |||COPII vesicle coat component
Erp5/Erp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 33.1 bits (72), Expect = 0.042
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +3
Query: 561 EAIVQDFTLMRKREEEMRDTNESTNNRVLFFSIFSMACL 677
E+I+ + L R RE RDT+ES N+RV+ ++I + L
Sbjct: 156 ESILGEQMLQRSREMTFRDTSESANSRVVRWTIVQIVVL 194
>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1040
Score = 31.5 bits (68), Expect = 0.13
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +1
Query: 274 TEIQGQRVDYIIKDSKGHILSQKDTVT-KGKFSFVTENYDMFEVCFISKVPSERRGI 441
T ++GQ++ YI+ D+ G++ ++ K K+S V E + FI+ + S G+
Sbjct: 259 TPLKGQKMHYIVCDTNGYLFGVYSSILGKNKWSLVMERLPIPPFDFITSLNSIHEGL 315
>SPAC521.02 |||WLM domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 283
Score = 29.5 bits (63), Expect = 0.52
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 364 FSFVTENYDMFEVCFISKVPSERRGIPHLVSLDIK-IGIEAKTYEGIGE 507
F FV + + + E+C I + P +RR HL +L I + AK Y+G G+
Sbjct: 108 FEFVMDVF-LHELCHIWQGPHDRRFFSHLSTLRAALIALYAKGYKGPGK 155
>SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 199
Score = 29.1 bits (62), Expect = 0.69
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +3
Query: 522 PMEVELKRLEDLSEAIVQDFTLMRKREEEMRDTNESTNNRVLFFSIFSMACL 677
P+ ++++L D + + RE R+T ESTN+RV ++SI L
Sbjct: 127 PLLGKVRQLHDTISKVKHEQEYFVARERIHRNTAESTNDRVKWWSILQTVIL 178
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 25.8 bits (54), Expect = 6.4
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +3
Query: 495 RDRGGAKLKPMEVELKRLEDLSEAIVQDFTLMRKREEE 608
R G + M++ L RLE LSE + F + KRE E
Sbjct: 644 RVHGKVEDAKMQILLPRLEQLSEFNSEKFKTVSKREVE 681
>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 25.4 bits (53), Expect = 8.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 320 FESLII*STLCPCISVTSYSPAL 252
F L++ T+C C+S T Y PA+
Sbjct: 131 FCKLVLVWTVCQCVSSTVYYPAI 153
>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 545
Score = 25.4 bits (53), Expect = 8.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 197 SLAPNTHKCLKD*LHANVLVQENM 268
S+ N H CL D + A+ +VQ N+
Sbjct: 405 SIRTNCHHCLDDGMQASGIVQSNL 428
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 25.4 bits (53), Expect = 8.5
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +3
Query: 498 DRGGAKLKPMEVELKRLEDLSEAIVQDFTLMRKREEEMRDTNESTN 635
+RG A+L+P++++ ++ E IV+ M EE+M N+ N
Sbjct: 213 ERGDAQLQPVKLQQMPMDKEMEKIVE----MDLEEEDMMHQNDPNN 254
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,992,834
Number of Sequences: 5004
Number of extensions: 59756
Number of successful extensions: 156
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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