Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0381
(739 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17502| Best HMM Match : No HMM Matches (HMM E-Value=.) 79 5e-15
SB_4813| Best HMM Match : EMP24_GP25L (HMM E-Value=3.9e-13) 42 4e-04
SB_49697| Best HMM Match : DUF602 (HMM E-Value=3) 31 0.74
SB_31140| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.97
SB_24040| Best HMM Match : Extensin_2 (HMM E-Value=0.009) 31 1.3
SB_26056| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_26185| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 29 3.0
SB_32454| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_20161| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_31706| Best HMM Match : Tropomyosin (HMM E-Value=2.7) 29 5.2
SB_8304| Best HMM Match : PLAT (HMM E-Value=0) 29 5.2
>SB_17502| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 385
Score = 78.6 bits (185), Expect = 5e-15
Identities = 35/85 (41%), Positives = 56/85 (65%)
Frame = +1
Query: 259 GEYDVTEIQGQRVDYIIKDSKGHILSQKDTVTKGKFSFVTENYDMFEVCFISKVPSERRG 438
GE+ +++ Q+ + + DS GH+ ++D TKGKF+F T++YDM+EVCF S+ S G
Sbjct: 105 GEFTLSDAPQQKTNLKVTDSTGHVFYKRDDATKGKFAFTTDDYDMYEVCFDSET-SHGGG 163
Query: 439 IPHLVSLDIKIGIEAKTYEGIGEVQ 513
VS++IK G+EAK YE + + +
Sbjct: 164 SDREVSINIKHGVEAKNYEDLAKAE 188
Score = 65.7 bits (153), Expect = 4e-11
Identities = 30/37 (81%), Positives = 33/37 (89%)
Frame = +3
Query: 513 KLKPMEVELKRLEDLSEAIVQDFTLMRKREEEMRDTN 623
KLKPMEVELKRLEDL +AIV DF MR+RE+EMRDTN
Sbjct: 189 KLKPMEVELKRLEDLGDAIVNDFAYMRQREQEMRDTN 225
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/37 (51%), Positives = 29/37 (78%)
Frame = +3
Query: 513 KLKPMEVELKRLEDLSEAIVQDFTLMRKREEEMRDTN 623
KLKP+++ ++RLED+++ IV F R+REEE R+TN
Sbjct: 257 KLKPIKLAMRRLEDMADEIVSSFAYFREREEEQRNTN 293
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 328 ILSQKDTVTKGKFSFVTENYDMFEVCF 408
+L K+ TKGKF+F + F++CF
Sbjct: 317 LLFTKENATKGKFAFTFDRDGHFDLCF 343
>SB_4813| Best HMM Match : EMP24_GP25L (HMM E-Value=3.9e-13)
Length = 348
Score = 42.3 bits (95), Expect = 4e-04
Identities = 21/59 (35%), Positives = 35/59 (59%)
Frame = +3
Query: 513 KLKPMEVELKRLEDLSEAIVQDFTLMRKREEEMRDTNESTNNRVLFFSIFSMACLFGSG 689
KL +++ +++L D E I ++ R REE R T+ESTN RVL++++ L +G
Sbjct: 273 KLTELQLRIRQLLDQVEQISKEQNYQRFREERFRMTSESTNQRVLWWALAQTVILLATG 331
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +1
Query: 307 IKDSKGHILSQKDTVTKGKFSFVTENYDMFEVCFISKVP--SERRGIPHLVSLDIKIGIE 480
+KD G I+ K ++G+F+F + +C S S G + LDI++G
Sbjct: 202 VKDPNGKIIMSKYYSSEGRFTFTSHTPGEHVICLHSNSTRWSLWAGGRLRIHLDIQVGEH 261
Query: 481 AKTYEGI 501
A Y I
Sbjct: 262 ANDYAQI 268
>SB_49697| Best HMM Match : DUF602 (HMM E-Value=3)
Length = 294
Score = 31.5 bits (68), Expect = 0.74
Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Frame = +3
Query: 498 DRGGAKLKPMEVELKRLEDLSEAIVQDFTLMRKREE--EMRDTNESTNNRV 644
D A+L +++EL +++L ++V+D LMR+R E E R+ + S + RV
Sbjct: 60 DTSTAELSQIKLELCEIKNLLLSVVEDNRLMRRRLEMGEQREPDASASARV 110
>SB_31140| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 31.1 bits (67), Expect = 0.97
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 235 ITRQRVSAGEYDVTEIQGQRVDYIIKDSKGHILSQKDTVTK 357
IT + + G V +QG R+D I D+ GH +S + +K
Sbjct: 16 ITVEELCRGRRSVDSMQGSRIDTIFTDAGGHYVSYRSGSSK 56
>SB_24040| Best HMM Match : Extensin_2 (HMM E-Value=0.009)
Length = 530
Score = 30.7 bits (66), Expect = 1.3
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Frame = -3
Query: 482 ASMPILISKLTRCGIPLLSDGTLDIKQTSNIS*FSVTNENFPFVTVSFCDKMCPFESLII 303
AS+PI+ +T IP++S G + I VT+ P +++ P S+ +
Sbjct: 402 ASIPIISMGVTSAPIPIISMGV--TSASIPIISMGVTSAPIPIISMGVTSAPIPIISMDV 459
Query: 302 *STLCPCISV---TSYSPALT 249
S L P IS+ +SY P ++
Sbjct: 460 TSKLIPIISMGVTSSYIPIIS 480
>SB_26056| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 153
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Frame = +3
Query: 498 DRGGAKLKPMEVELKRLEDLSEAIVQDFTLMRKREE--EMRDTNESTNNRV 644
D A+L +++EL +++L ++V+D LMR+R + E R+ + S + RV
Sbjct: 74 DTSTAELSQIKLELCEIKNLLLSVVEDNRLMRRRLDMREQREPDASASARV 124
>SB_26185| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 682
Score = 29.9 bits (64), Expect = 2.3
Identities = 22/73 (30%), Positives = 39/73 (53%)
Frame = +3
Query: 426 RKKRYSTSSKLRY*NRHRSKDL*RDRGGAKLKPMEVELKRLEDLSEAIVQDFTLMRKREE 605
R+KR + + R +R RS+D RDR + K E E R DL E ++ R++E
Sbjct: 266 REKRPRSRERERSRDRERSRDRERDR--TREKSPEREKDRDRDLDE---EELAEKRRQER 320
Query: 606 EMRDTNESTNNRV 644
++R+ +++ R+
Sbjct: 321 KLRERDQAYYERL 333
>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 6725
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = -3
Query: 371 NENFPFVTVSFCDKMCPFESLII*STLCPCISVTSYSPALTRWRVINLSNTCVCSAP 201
NE + C P + + +T+ PC VT SP + +V + TCVC P
Sbjct: 5328 NELIEVASRGSCPTTGPSTASPVPTTVDPCSGVTCDSPPYSTCKVQDDKPTCVCIEP 5384
>SB_32454| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1161
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +3
Query: 546 LEDLSEAIVQDFTLMRKREEEMRDTNE 626
++ LSE++ + + RK EEE+RD++E
Sbjct: 738 IDKLSESLEKSVAVQRKMEEELRDSSE 764
>SB_20161| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 475
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +3
Query: 501 RGGAKLKPMEVELKRLEDLSEAIVQDFTLMRKREEEMRDTNESTNNRVL 647
R G L+ +E ELK +D E L RKR+ E R T + + + L
Sbjct: 308 RQGRALEEVERELKLAKDACERFKNQKRLTRKRDHEKRFTRKRDHEKRL 356
>SB_31706| Best HMM Match : Tropomyosin (HMM E-Value=2.7)
Length = 275
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +3
Query: 534 ELKRLEDLSEAIVQDFTLMRKREEEMRDTNESTNNRV 644
+L++ + E+++QD KREEE R+ + R+
Sbjct: 19 KLEKFQAKEESLLQDIQAAEKREEERREKRQGAERRL 55
>SB_8304| Best HMM Match : PLAT (HMM E-Value=0)
Length = 1182
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/59 (27%), Positives = 31/59 (52%)
Frame = +3
Query: 471 RHRSKDL*RDRGGAKLKPMEVELKRLEDLSEAIVQDFTLMRKREEEMRDTNESTNNRVL 647
+ R ++ R+ G + K +E ELK +ED + +++ K+EEE + + N+ L
Sbjct: 655 KKREDEVKREEEGRRQK-VEAELKLIEDEHKQRLEELEKKTKKEEEKKRSEHVNNDEEL 712
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,099,492
Number of Sequences: 59808
Number of extensions: 439792
Number of successful extensions: 1028
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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