Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0379
         (802 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c...    30   0.33 
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po...    29   1.0  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    28   1.8  
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    27   4.1  
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    27   4.1  
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    27   4.1  
SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2 |Schizosacc...    27   4.1  
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    27   4.1  
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...    26   7.2  

>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 959

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +1

Query: 202 EVTNNIPENAPEK-EKDMKRTRRPIMANPKRLHYLMRKAMKNLKRKN 339
           EV N + E   E  +      + PI ANPK L + +  A KNLK K+
Sbjct: 837 EVVNVVTEYFKENPDMSFVVAKVPISANPKALSFALTYAKKNLKDKS 883


>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 284

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +1

Query: 238 KEKDMKRTRRPIMANPKRLHYLMRKAMKNLKRKNPNQLSRNQQS 369
           K+K  K+T      +PK+L  + +K  K  K+K+    S+ ++S
Sbjct: 174 KKKSKKKTSTGSALDPKKLEKITKKKKKEHKKKDKESSSKKRKS 217


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
 Frame = +1

Query: 208 TNNIPENAPEKEKDMKRTRRPIMANPKRL----HYLMRKAMKNLKRKNPNQLSRNQQSIK 375
           + ++  N P +EK  K T + ++ NP  +    H  M K  ++L++K P  L+ N  + +
Sbjct: 685 SKSMHSNKPFEEKSEKPTTKRLVTNPSNVNASWHSNMLKRQEDLRKKKP--LTDNGATSR 742

Query: 376 QILR 387
            +L+
Sbjct: 743 HMLK 746


>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 226 FQGCYS*LQQSCLN*ICFV 170
           F GCY+   QSC+N +CF+
Sbjct: 87  FLGCYTMGFQSCINMLCFL 105


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 226 FQGCYS*LQQSCLN*ICFV 170
           F GCY+   QSC+N +CF+
Sbjct: 87  FLGCYTMGFQSCINMLCFL 105


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 226 FQGCYS*LQQSCLN*ICFV 170
           F GCY+   QSC+N +CF+
Sbjct: 87  FLGCYTMGFQSCINMLCFL 105


>SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 283 PKRLHYLMRKAMKNLKRKNPNQLSRN 360
           PK    L +K  KNL RK  N+L RN
Sbjct: 169 PKPSCPLFKKMQKNLSRKLDNELERN 194


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 226 FQGCYS*LQQSCLN*ICFV 170
           F GCY+   QSC+N +CF+
Sbjct: 87  FLGCYTMGFQSCINMLCFL 105


>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 17/65 (26%), Positives = 32/65 (49%)
 Frame = +1

Query: 172 QNKFNSNMTVEVTNNIPENAPEKEKDMKRTRRPIMANPKRLHYLMRKAMKNLKRKNPNQL 351
           QN  ++  T +   +      ++EK+ K   + +M+N +R  Y   K  +N K +N N  
Sbjct: 531 QNSKSAKKTKKRQRDTLTAEEKEEKEAKELSKMMMSNKQRKLYSKLK-NENSKNENYNNA 589

Query: 352 SRNQQ 366
            RN++
Sbjct: 590 LRNRK 594


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,210,714
Number of Sequences: 5004
Number of extensions: 65457
Number of successful extensions: 196
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)