Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0379
(802 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0705 + 20032111-20032437,20032525-20032896 31 1.4
03_06_0008 - 30978448-30978593,30978673-30978733,30978822-309790... 31 1.4
03_06_0006 + 30963331-30963457,30963751-30964715,30965166-309653... 31 1.4
12_01_1054 + 10847342-10847543,10847627-10847962,10848557-108488... 30 1.9
06_01_0996 + 7746358-7746493,7747102-7747262,7747586-7747647,774... 30 2.5
10_08_0710 + 20070655-20070990,20071074-20071469 29 3.3
03_02_0919 - 12392471-12392636,12392740-12392931,12393366-123934... 29 3.3
05_03_0643 - 16515183-16515758,16516502-16516532,16516717-165167... 29 4.3
06_01_0897 - 6903294-6903401,6903781-6903855,6904239-6904379,690... 29 5.7
03_05_0478 - 24712157-24712177,24712206-24712260,24712377-247124... 29 5.7
10_08_0714 + 20081801-20082130,20082205-20082597 28 7.5
09_06_0086 - 20763085-20763162,20763233-20763286,20763287-207639... 28 7.5
06_01_0983 - 7630651-7630683,7630717-7630942,7630993-7631234,763... 28 7.5
10_08_0720 - 20100406-20100798,20100917-20101249 28 9.9
10_08_0706 + 20034534-20034860,20034988-20035368 28 9.9
>10_08_0705 + 20032111-20032437,20032525-20032896
Length = 232
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/52 (36%), Positives = 29/52 (55%)
Frame = +3
Query: 441 SPYCLKVETWLRLAGIKYENVEHMPNIVPKKANCRSWN*MAKK*PIALSSSK 596
SPY L+V+ L L G+ YE VE +++ K S N + KK P+ + + K
Sbjct: 16 SPYVLRVKFALSLKGLSYEYVEE--DLMNKSDLLLSSNPVNKKVPVLIHNGK 65
>03_06_0008 -
30978448-30978593,30978673-30978733,30978822-30979007,
30979458-30980422,30980716-30980842
Length = 494
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +2
Query: 494 RERRAHAKYRSKKGQLPFVELNGEEIADSTFIIKDLS 604
R+RR A K+G P E NGEE AD+ + D+S
Sbjct: 24 RQRRKRAAAGKKQGGSPASENNGEEHADAQGCLPDIS 60
>03_06_0006 +
30963331-30963457,30963751-30964715,30965166-30965351,
30965440-30965500,30965580-30965623
Length = 460
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +2
Query: 494 RERRAHAKYRSKKGQLPFVELNGEEIADSTFIIKDLS 604
R+RR A K+G P E NGEE AD+ + D+S
Sbjct: 24 RQRRKRAAAGKKQGGSPASENNGEEHADAQGCLPDIS 60
>12_01_1054 +
10847342-10847543,10847627-10847962,10848557-10848807,
10849226-10849313,10849548-10849723,10850597-10850656,
10850811-10850901,10851563-10851639,10852565-10852653,
10852950-10853061,10853623-10853725,10854892-10855121
Length = 604
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = -2
Query: 660 DITRCSDVRPASRSLLYFSERSLMMKVLSAISSPFSSTNGSWPFLERYLACALRS 496
+I CS PA RSL E + +++ + F+S+ S P +E + A AL S
Sbjct: 244 NIVSCSKFFPAKRSLSLTRENADAIQITILSNQSFNSSKASTPAVEYFPAPALAS 298
>06_01_0996 +
7746358-7746493,7747102-7747262,7747586-7747647,
7748142-7748595,7748994-7749134,7749444-7749633,
7749842-7750530,7750605-7750804,7751210-7751375,
7751850-7752046,7752162-7752396
Length = 876
Score = 29.9 bits (64), Expect = 2.5
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +2
Query: 647 QRVISHAMISMIENHLSWVILWWRAKYPDSVIK 745
+++++H M+S EN + W+ + W K PD +K
Sbjct: 843 KKLLTHKMLSFQENRVQWMQVLW-GKEPDPTLK 874
>10_08_0710 + 20070655-20070990,20071074-20071469
Length = 243
Score = 29.5 bits (63), Expect = 3.3
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +3
Query: 441 SPYCLKVETWLRLAGIKYENVEHMPNIVPKKANCRSWN*MAKK*PIALSSSK 596
SPY L+ + L G+ YENVE ++ K S N + KK P+ + + K
Sbjct: 19 SPYVLRAKFALSFKGLSYENVEE--DLHNKSELLLSSNPVHKKVPVLIHNGK 68
>03_02_0919 -
12392471-12392636,12392740-12392931,12393366-12393463,
12393719-12394219,12394287-12394532,12395627-12396029,
12396155-12396348,12396755-12396925,12397064-12397366,
12397463-12397520,12397678-12397757,12398910-12398987,
12399530-12399613,12399692-12399757,12399908-12399980,
12400080-12400249,12400368-12400427,12400632-12400679,
12401217-12401255,12401364-12401372
Length = 1012
Score = 29.5 bits (63), Expect = 3.3
Identities = 19/57 (33%), Positives = 23/57 (40%)
Frame = +1
Query: 220 PENAPEKEKDMKRTRRPIMANPKRLHYLMRKAMKNLKRKNPNQLSRNQQSIKQILRK 390
PE APEK+ D K R + N K K K LK K Q +L+K
Sbjct: 10 PEKAPEKQLDEKTLERKLRKNQK----AKEKEEKRLKAKQKEAAMLQAQPALDVLKK 62
>05_03_0643 -
16515183-16515758,16516502-16516532,16516717-16516756,
16517183-16517243
Length = 235
Score = 29.1 bits (62), Expect = 4.3
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Frame = +1
Query: 553 TEWRRNSR*HF---HHQR--SFREIQQRS*CWSDVG--AAGYISRHDLHDREPPVVGDSL 711
T++ N R HF HH +++++S S++ A I+R+D D+ PV+ +L
Sbjct: 27 TDYLANIRVHFLRSHHSTVGKVSKMEEKSSAMSNIAPVAPTRITRYDKDDKHKPVIVCAL 86
Query: 712 VARQVPGQ 735
A +P Q
Sbjct: 87 AALPIPSQ 94
>06_01_0897 -
6903294-6903401,6903781-6903855,6904239-6904379,
6904496-6904646,6905035-6905178,6905276-6905366,
6906071-6906308
Length = 315
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +2
Query: 524 SKKGQLPFVELNGEEIADSTFIIKDLSEKY 613
S +G++P V+L + +ADS I + + EKY
Sbjct: 115 SPEGKVPIVKLEEQWVADSDVITQAIEEKY 144
>03_05_0478 -
24712157-24712177,24712206-24712260,24712377-24712473,
24712558-24713302,24713822-24714189,24714279-24714419,
24715480-24715849
Length = 598
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +1
Query: 184 NSNMTVEVTN-NIPENAPEKEKDMKRTRRPI 273
N+N E+ N N+P + P+K+K K RR I
Sbjct: 126 NNNDLAEIRNDNVPASIPQKQKTSKAERRAI 156
>10_08_0714 + 20081801-20082130,20082205-20082597
Length = 240
Score = 28.3 bits (60), Expect = 7.5
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +3
Query: 441 SPYCLKVETWLRLAGIKYENVEHMPNIVPKKANCRSWN*MAKK*PIALSSSK 596
SPY +V+ L L G+ YE V + K S N + KK P+ + + K
Sbjct: 15 SPYVSRVKLALHLKGLSYEYVVEEDHFNNKSELLLSSNPVHKKVPVMIHNGK 66
>09_06_0086 -
20763085-20763162,20763233-20763286,20763287-20763975,
20764173-20764324,20764404-20764604,20764920-20765064,
20765552-20765588,20765880-20765965,20766093-20766329,
20766501-20766609,20767025-20767135
Length = 632
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -2
Query: 150 LTRIASLTITAVRARSNNRTACRLLLSGVCSTIICFKQTK 31
+ +I + + +R R + R LL + + IICF++TK
Sbjct: 1 MVKIVTYNVNGLRPRVAQHGSLRRLLDALDADIICFQETK 40
>06_01_0983 -
7630651-7630683,7630717-7630942,7630993-7631234,
7631502-7631591,7631680-7631845,7632225-7633191,
7633402-7633591,7633908-7634048,7634416-7634736
Length = 791
Score = 28.3 bits (60), Expect = 7.5
Identities = 10/38 (26%), Positives = 22/38 (57%)
Frame = +2
Query: 647 QRVISHAMISMIENHLSWVILWWRAKYPDSVIKGYQVN 760
+++++H M+S N + W+ + W K PD +K ++
Sbjct: 750 KKLLTHKMLSFQGNRVQWMQVLW-GKEPDPTLKNQHIS 786
>10_08_0720 - 20100406-20100798,20100917-20101249
Length = 241
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +3
Query: 441 SPYCLKVETWLRLAGIKYENVEHMPNIVPKKANCRSWN*MAKK*PIALSSSK 596
SP+ ++V L+L G+ YE +E ++ K S N + KK P+ + K
Sbjct: 16 SPFAIRVCIALKLKGVSYEYIEE--DLANKSELLLSSNPVHKKIPVLIHGGK 65
>10_08_0706 + 20034534-20034860,20034988-20035368
Length = 235
Score = 27.9 bits (59), Expect = 9.9
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +3
Query: 438 TSPYCLKVETWLRLAGIKYENVEHMPNIVPKKANCRSWN*MAKK*PIALSSSK 596
TSP+ L+V+ L G+ YE E ++ K S N + KK P+ + + K
Sbjct: 15 TSPFALRVKLALSFKGLSYEYAEE--DLSNKSELLLSSNPVHKKVPVLIHNGK 65
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,325,718
Number of Sequences: 37544
Number of extensions: 433710
Number of successful extensions: 1310
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1310
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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