Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0379
         (802 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    25   0.62 
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    25   0.82 
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    24   1.9  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    23   3.3  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   7.6  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   7.6  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   7.6  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    22   7.6  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   7.6  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 25.4 bits (53), Expect = 0.62
 Identities = 12/27 (44%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = +2

Query: 506 AHAKYRSK-KGQLPFVELNGEEIADST 583
           +H KYR + + +LP++EL  + I+DST
Sbjct: 331 SHPKYRLELQKRLPWLELQEKPISDST 357


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 25.0 bits (52), Expect = 0.82
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +1

Query: 238 KEKDMKRTRRPIMANPKRLHYLMRKAMKNLKRKNPNQLSRN 360
           KE+   RT R     PK +  L  K + N    N N  + N
Sbjct: 297 KERSRDRTERERSREPKIISSLSNKTIHNNNNYNNNNYNNN 337


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
 Frame = +1

Query: 238 KEKDMKRTRRPIMANPKRLHYLMRKAMKNLKRKNPNQLSR-NQQSIKQILRKT*YISINF 414
           KE+   RT R     PK +  L  K + N    N N  +  N  +      K  Y +IN+
Sbjct: 64  KERSRDRTERERSREPKIISSLSNKTIHNNNNYNNNNYNNYNYNNNNYNNYKKLYYNINY 123


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = +1

Query: 238 KEKDMKRTRRPIMANPKRLHYLMRKAMKNLKRKNPNQLSRNQQSIKQILRKT*YI 402
           KE+   RT R     PK +  L  K + N    N N  + N  + K++     YI
Sbjct: 64  KERSRDRTERERSREPKIISSLSNKTIHN----NNNYNNNNYNNYKKLYYNINYI 114


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 16/59 (27%), Positives = 25/59 (42%)
 Frame = +1

Query: 238 KEKDMKRTRRPIMANPKRLHYLMRKAMKNLKRKNPNQLSRNQQSIKQILRKT*YISINF 414
           KE+   RT R     PK +  L  K + N    N  + + N  +     +K  Y +IN+
Sbjct: 64  KERSRDRTERERSREPKIISSLSNKTIHN---NNNYKYNYNNNNYNNNCKKL-YYNINY 118


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 16/59 (27%), Positives = 25/59 (42%)
 Frame = +1

Query: 238 KEKDMKRTRRPIMANPKRLHYLMRKAMKNLKRKNPNQLSRNQQSIKQILRKT*YISINF 414
           KE+   RT R     PK +  L  K + N    N  + + N  +     +K  Y +IN+
Sbjct: 64  KERSRDRTERERSREPKIISSLSNKTIHN---NNNYKYNYNNNNYNNNCKKL-YYNINY 118


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 16/59 (27%), Positives = 25/59 (42%)
 Frame = +1

Query: 238 KEKDMKRTRRPIMANPKRLHYLMRKAMKNLKRKNPNQLSRNQQSIKQILRKT*YISINF 414
           KE+   RT R     PK +  L  K + N    N  + + N  +     +K  Y +IN+
Sbjct: 64  KERSRDRTERERSREPKIISSLSNKTIHN---NNNYKYNYNNNNYNNNCKKL-YYNINY 118


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 15/48 (31%), Positives = 18/48 (37%)
 Frame = +1

Query: 238 KEKDMKRTRRPIMANPKRLHYLMRKAMKNLKRKNPNQLSRNQQSIKQI 381
           KE+   RT R     PK +  L      N    N   L  N   I+QI
Sbjct: 297 KERSRNRTEREKSKEPKIISSLSNNYNYNNYNNNYKPLHYNINYIEQI 344


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = +1

Query: 271 IMANPKRLHYLMRKAMKNLKRKN---PNQLS 354
           I+ N KR++   R  +KN+ + N    NQLS
Sbjct: 18  ILKNDKRIYLSPRTPIKNVYKNNIETKNQLS 48


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,432
Number of Sequences: 438
Number of extensions: 4290
Number of successful extensions: 32
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)