Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0377
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb...    56   7e-09
SPBC409.10 |ade7||phosphoribosylamidoimidazolesuccinocarboxamide...    30   0.40 
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    27   2.8  
SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr 1...    26   5.0  
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce...    26   6.6  
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos...    25   8.7  

>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 55.6 bits (128), Expect = 7e-09
 Identities = 25/74 (33%), Positives = 42/74 (56%)
 Frame = +1

Query: 517 KLKGEMMDLQHGSAFMRNAKIQSSTDYSITAGSKICVVTAGVRQREGESRLDLVQRNTDV 696
           K +GE MDL H +      ++    DY     +   V+TAG  Q+ GE+R+DL++ N  +
Sbjct: 57  KAEGEAMDLNHAAPLSHETRVYLG-DYKDCKDATAVVITAGKNQKPGETRMDLLKANISI 115

Query: 697 LKQIIPQLIKYSPD 738
            K+I+ ++ KY+ D
Sbjct: 116 FKEILREVTKYTKD 129


>SPBC409.10 |ade7||phosphoribosylamidoimidazolesuccinocarboxamide
           synthase Ade7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 299

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 26/89 (29%), Positives = 35/89 (39%), Gaps = 6/89 (6%)
 Frame = +2

Query: 299 IFEMATNNTNGHCENYHKMESLKKLFQPVHEKVDETWSKV------TIVGVGQVGMAAAF 460
           +F  +T    GH EN H  E  K +   + ++V ET  K+        +  G +     F
Sbjct: 152 LFTPSTKAAEGHDENIHPDEVSKIVGPELAKQVAETSVKLYKIARDVALKKGIIIADTKF 211

Query: 461 SMLTQNVTNNIALVDMWLTN*KER*WTCS 547
                  TN I LVD  LT    R W  S
Sbjct: 212 EFGVDETTNKIVLVDEVLTPDSSRFWLAS 240


>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
           Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +1

Query: 514 DKLKGEMMDLQHGSAFMRNAKIQSSTDYSITAGSKICV 627
           +++K E+ +L H    +R  K Q+  DY+    SK+ +
Sbjct: 268 ERIKAEITELNHSLELLRVEKQQNDEDYTNIMKSKVAL 305


>SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 455

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 59  HSKLTIERDCTRNETVR 9
           HSK  + R+C RNE+V+
Sbjct: 91  HSKSVLPRECVRNESVK 107


>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 415

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 419 SPCSKFRPPSRARAGTASSGTPSCGSSRNARW 324
           SP  K +   R+  G++SSG+ SCGS     W
Sbjct: 39  SPKKKKKGFFRSLFGSSSSGSKSCGSPFTRIW 70


>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
           Rec8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 23/97 (23%), Positives = 43/97 (44%)
 Frame = +1

Query: 454 SFLYADAECYE*HRSSRHVADKLKGEMMDLQHGSAFMRNAKIQSSTDYSITAGSKICVVT 633
           SF+Y D+  +          D+  G++ +L  G+    +  +Q+++ +S   GS    V 
Sbjct: 187 SFVYEDSRAFSTEEPLDFEFDE-NGDIQELTKGT-INSDPSLQAASQHS-NLGS----VQ 239

Query: 634 AGVRQREGESRLDLVQRNTDVLKQIIPQLIKYSPDHN 744
                 E ESR+ + + + DVL   +P       +HN
Sbjct: 240 REYNSEEQESRIHMFEIDEDVLPLPVPLQSVMDSEHN 276


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,759,746
Number of Sequences: 5004
Number of extensions: 51821
Number of successful extensions: 146
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)