Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0377
(747 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0042 + 295608-296222,298479-298925 91 1e-18
06_01_0033 - 346273-347355 84 1e-16
01_06_0072 + 26184592-26184828,26184934-26185107,26185591-261857... 35 0.079
03_05_0267 - 22538631-22539452 34 0.14
05_07_0204 - 28397597-28397737,28398225-28398342,28399215-283993... 33 0.24
04_04_0724 + 27578337-27578371,27578492-27578607,27578717-275788... 32 0.42
06_03_0420 + 20593468-20593719,20594534-20594581,20595155-20595970 31 0.97
06_01_0599 - 4327671-4330034 31 0.97
02_05_0256 + 27201483-27202499,27203297-27203375,27204617-272049... 30 2.2
01_05_0167 + 18849791-18849973,18850081-18850250,18850341-188504... 29 3.0
03_05_0358 - 23438416-23439282,23440116-23440163,23440343-234403... 29 3.9
03_02_0249 - 6792210-6792215,6794332-6794607,6794692-6795180,679... 29 3.9
03_06_0345 - 33281126-33281783,33281872-33282063,33282175-332822... 29 5.2
03_03_0085 - 14341047-14341258,14343783-14343858,14344691-14344777 29 5.2
03_01_0012 - 101584-101898,102274-102531,102932-103474 29 5.2
02_04_0579 - 24050219-24050254,24050255-24050398,24051566-24051706 28 6.9
07_01_0743 + 5678086-5678098,5678436-5678560,5678666-5678800,567... 28 9.1
05_05_0360 - 24395993-24397540,24397626-24397730,24398731-24399111 28 9.1
02_04_0547 - 23786224-23786718 28 9.1
01_06_0789 - 32010131-32010330,32010438-32010866,32011658-320117... 28 9.1
>02_01_0042 + 295608-296222,298479-298925
Length = 353
Score = 90.6 bits (215), Expect = 1e-18
Identities = 39/77 (50%), Positives = 58/77 (75%)
Frame = +1
Query: 508 VADKLKGEMMDLQHGSAFMRNAKIQSSTDYSITAGSKICVVTAGVRQREGESRLDLVQRN 687
V DKL+GEM+DLQH +AF+ ++ S TD ++T GS + +VTAG RQ GESRL+L+QRN
Sbjct: 73 VPDKLRGEMLDLQHAAAFLPRVRLVSDTDLAVTRGSDLAIVTAGARQIPGESRLNLLQRN 132
Query: 688 TDVLKQIIPQLIKYSPD 738
+ ++I+P L ++SP+
Sbjct: 133 VALFRKIVPALAEHSPE 149
Score = 37.9 bits (84), Expect = 0.008
Identities = 15/32 (46%), Positives = 26/32 (81%)
Frame = +2
Query: 410 SKVTIVGVGQVGMAAAFSMLTQNVTNNIALVD 505
+K++++G G VGMA A ++LT+++ + IALVD
Sbjct: 40 TKISVIGAGNVGMAIAQTILTRDMADEIALVD 71
>06_01_0033 - 346273-347355
Length = 360
Score = 83.8 bits (198), Expect = 1e-16
Identities = 37/77 (48%), Positives = 55/77 (71%)
Frame = +1
Query: 508 VADKLKGEMMDLQHGSAFMRNAKIQSSTDYSITAGSKICVVTAGVRQREGESRLDLVQRN 687
VADK++GEM+DLQH +AF+ I S T+ S+T S + +VTAG RQ GE+RL+L+QRN
Sbjct: 72 VADKVRGEMLDLQHAAAFLPRVNIVSGTEVSLTRSSDLVIVTAGARQIPGETRLNLLQRN 131
Query: 688 TDVLKQIIPQLIKYSPD 738
+ ++I+P + SP+
Sbjct: 132 VSLFRKIVPAAAEASPE 148
Score = 37.1 bits (82), Expect = 0.015
Identities = 14/31 (45%), Positives = 24/31 (77%)
Frame = +2
Query: 413 KVTIVGVGQVGMAAAFSMLTQNVTNNIALVD 505
K++++G G VGMA A ++LTQ++ + I L+D
Sbjct: 40 KISVIGAGNVGMAIAQTILTQDLADEIVLID 70
>01_06_0072 +
26184592-26184828,26184934-26185107,26185591-26185759,
26185863-26185924,26186506-26186630,26186735-26186852,
26187760-26187897
Length = 340
Score = 34.7 bits (76), Expect = 0.079
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +1
Query: 610 GSKICVVTAGVRQREGESRLDLVQRNTDVLKQIIPQLIKYSPD 738
GS I ++ AGV ++ G +R DL N ++K + + KY P+
Sbjct: 95 GSDIVIIPAGVPRKPGMTRDDLFNINAGIVKNLCTAIAKYCPN 137
>03_05_0267 - 22538631-22539452
Length = 273
Score = 33.9 bits (74), Expect = 0.14
Identities = 17/39 (43%), Positives = 19/39 (48%)
Frame = -2
Query: 452 RPSQPDRPRQWSPCSKFRPPSRARAGTASSGTPSCGSSR 336
R S P RPR W PCS PP+ A + PS SR
Sbjct: 171 RASPPARPRWW-PCSPSSPPASPSPSPARTSPPSSSPSR 208
>05_07_0204 -
28397597-28397737,28398225-28398342,28399215-28399339,
28399683-28399744,28399867-28400035,28400594-28400767,
28400856-28401089
Length = 340
Score = 33.1 bits (72), Expect = 0.24
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +1
Query: 610 GSKICVVTAGVRQREGESRLDLVQRNTDVLKQIIPQLIKYSPD 738
GS + ++ AGV ++ G +R DL N ++K + + KY P+
Sbjct: 94 GSDVVIIPAGVPRKPGMTRDDLFNINAGIVKGLCTAISKYCPN 136
>04_04_0724 +
27578337-27578371,27578492-27578607,27578717-27578875,
27578954-27579129,27580406-27580683,27580759-27580894,
27580984-27581095,27581177-27581268
Length = 367
Score = 32.3 bits (70), Expect = 0.42
Identities = 16/64 (25%), Positives = 30/64 (46%)
Frame = +1
Query: 511 ADKLKGEMMDLQHGSAFMRNAKIQSSTDYSITAGSKICVVTAGVRQREGESRLDLVQRNT 690
A+ L G M+L + + + +S + G + +V G +R+G R DL+ +N
Sbjct: 84 ANALNGVRMELIDAALPLLRGVVATSDEAEAFKGVNVAIVIGGWPRRDGMERKDLISKNV 143
Query: 691 DVLK 702
+ K
Sbjct: 144 TIYK 147
>06_03_0420 + 20593468-20593719,20594534-20594581,20595155-20595970
Length = 371
Score = 31.1 bits (67), Expect = 0.97
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = -2
Query: 452 RPSQPDRPRQWSPCSKFRPPSRA--RAGTASSGTPSCGSS 339
RP R SPCS ++P RA ASS PS GSS
Sbjct: 109 RPDPIGRSASPSPCSSYQPSPRASYNPSPASSSFPSSGSS 148
>06_01_0599 - 4327671-4330034
Length = 787
Score = 31.1 bits (67), Expect = 0.97
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +2
Query: 308 MATNNTNGHCENYHKMESLKKLFQPVHEKVDETWSKVTIVGVGQVGMA-AAFSMLTQNVT 484
++T T HC + MES +K F + EK E+W+ + I G Q G+ A ++ Q V
Sbjct: 350 VSTAITTLHCR-LNDMESARKAFDTMPEKTMESWNAM-ISGYAQNGLTEMAVALFEQMVK 407
Query: 485 NNI 493
N+
Sbjct: 408 LNV 410
>02_05_0256 +
27201483-27202499,27203297-27203375,27204617-27204946,
27205029-27205198
Length = 531
Score = 29.9 bits (64), Expect = 2.2
Identities = 28/87 (32%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
Frame = -2
Query: 533 ISPFNLSATCLLERCYS*HSASA*RKLRPSQPDRPRQWSPCSKF--RPPSRARAGTASSG 360
+S A L R ASA R LR S D PR S +PP AG + G
Sbjct: 126 LSALQAEARAALRREDPARLASAARALRRSGRDLPRIASSARAVAAKPPPPPPAGLPADG 185
Query: 359 TPSCGSSRNARWCCLSPSQILFNTVSS 279
T + +A S S +F+ VSS
Sbjct: 186 TALAAAIADATAAVASASAAVFSGVSS 212
>01_05_0167 +
18849791-18849973,18850081-18850250,18850341-18850413,
18850729-18850839,18850947-18850992,18851085-18851148,
18851810-18851912,18851999-18852094,18852186-18852215,
18852434-18852533,18852761-18852845,18852965-18853088
Length = 394
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/60 (18%), Positives = 26/60 (43%)
Frame = +2
Query: 314 TNNTNGHCENYHKMESLKKLFQPVHEKVDETWSKVTIVGVGQVGMAAAFSMLTQNVTNNI 493
++ NG + + +++ L+K P + W + T V G + QN+++ +
Sbjct: 197 SSELNGEDDEWSEVQKLQKRITPFRNSEIDKWQRKTQVTTGAAALKGKLHAFNQNISDQV 256
>03_05_0358 -
23438416-23439282,23440116-23440163,23440343-23440382,
23440459-23440610
Length = 368
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = -2
Query: 476 SASA*RKLRPSQPDRPRQWSPCSKFRPPSRARAGTASSGTPSCGSSRNARWCCLSPSQ 303
++SA R P PR+ P S F P + AR +A G+P+ + R+ C + ++
Sbjct: 20 ASSAPRIRAAPLPSAPRRRVPSSAFSPFAAARPMSAMMGSPAAMAMRSFCVCAIDSTR 77
>03_02_0249 -
6792210-6792215,6794332-6794607,6794692-6795180,
6795832-6795900,6797316-6797403,6798193-6798224,
6799277-6799308,6799412-6799646
Length = 408
Score = 29.1 bits (62), Expect = 3.9
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = -2
Query: 419 SPCSKFRPPSRARAGTASSGT-PSCGSSRNARWCCLSPSQI--LFNTVSS*NTLSNMIT 252
SP + P R +SS P C + N WC L P Q+ L N VS + L N+ T
Sbjct: 90 SPGQQCSPSERFDEWKSSSRRRPKCDVATNLHWCHLHPFQMSTLSNKVSLSSNLLNLQT 148
>03_06_0345 -
33281126-33281783,33281872-33282063,33282175-33282217,
33282751-33282874,33282966-33283058,33284484-33284685,
33284751-33284857,33285462-33285543,33285629-33285666,
33285751-33285837,33286324-33286434,33286554-33286904
Length = 695
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = -2
Query: 458 KLRPSQPDRPRQWSPCSKFRPPSRARAGTASSGTPSC 348
K+ P P PRQ + RPP+ A AG TP C
Sbjct: 50 KVPPPPPPPPRQ----ERARPPAGAAAGEEEETTPKC 82
>03_03_0085 - 14341047-14341258,14343783-14343858,14344691-14344777
Length = 124
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 308 MATNNTNGHCENYHKMESLKKLFQPVHEKVDETWSKVTI 424
M T+ GHC +Y + SL+++ K+DE W TI
Sbjct: 1 MTTSRPTGHCTSYESVASLEEVQNKNTHKLDE-WVLRTI 38
>03_01_0012 - 101584-101898,102274-102531,102932-103474
Length = 371
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -1
Query: 735 RTVLYQLRDYLFKNIGVSLHEIETRFTFALSNTSSNHADLRA 610
R L + +F N+G + I T+ LS + HADL+A
Sbjct: 316 RDELLESAGEVFANVGSGVLRIRVNHTYPLSQAARAHADLQA 357
>02_04_0579 - 24050219-24050254,24050255-24050398,24051566-24051706
Length = 106
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -2
Query: 407 KFRPPSRARAGTASSGTPSCGSSR 336
+FRPPS A A ASS + C + R
Sbjct: 9 QFRPPSTAAAAAASSASRRCAARR 32
>07_01_0743 +
5678086-5678098,5678436-5678560,5678666-5678800,
5679128-5679200,5679581-5679654,5680292-5680396,
5680637-5680881,5680965-5681052,5681202-5681244,
5681319-5681475,5681648-5681776,5682012-5682084,
5682281-5682445,5682530-5682544,5682651-5682780,
5684517-5684651,5684880-5684945,5685088-5685170,
5685503-5685549,5685736-5685814,5685914-5686006
Length = 690
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +2
Query: 365 KKLFQPVHEKVDETWSKVTIVGVGQVGMAAAFSMLTQ 475
K LF P E KV I+G G GM+ A +L Q
Sbjct: 7 KGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQ 43
>05_05_0360 - 24395993-24397540,24397626-24397730,24398731-24399111
Length = 677
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -2
Query: 431 PRQWSPCSKFRPPSRARAGTASSGTPSCGSSRNA 330
PRQ +P S+ R P R G +PS S+R A
Sbjct: 22 PRQAAPGSRHRTPRRGGRGRLLVQSPSLASARRA 55
>02_04_0547 - 23786224-23786718
Length = 164
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +2
Query: 299 IFEMATNNTNGHCENYHKMESLKKLFQPVH-EKVDETWSKVTIVGVGQVGMAAAFSMLTQ 475
+FE+ + +G ESL++L PVH E++ T +++ G G V M F+ L +
Sbjct: 12 VFELFDRDGDGRITREELTESLERLGMPVHREELAATIARIDANGDGCVDM-DEFTQLYE 70
Query: 476 NV 481
V
Sbjct: 71 TV 72
>01_06_0789 -
32010131-32010330,32010438-32010866,32011658-32011752,
32011836-32011933,32012586-32012942,32013615-32013792,
32013856-32013936,32014441-32014548,32014916-32015178
Length = 602
Score = 27.9 bits (59), Expect = 9.1
Identities = 22/67 (32%), Positives = 28/67 (41%)
Frame = +2
Query: 263 LKAYFNCLQY*IIFEMATNNTNGHCENYHKMESLKKLFQPVHEKVDETWSKVTIVGVGQV 442
LK Y C Q I+ + N C+N+ E K LFQ H+ G +
Sbjct: 234 LKKYCECFQANIL--CSENCKCMDCKNFEGSEERKALFQGDHKNSIHMQQAANAAVNGAI 291
Query: 443 GMAAAFS 463
G AAAFS
Sbjct: 292 G-AAAFS 297
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,717,389
Number of Sequences: 37544
Number of extensions: 340631
Number of successful extensions: 1097
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -