Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0377
         (747 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2622| Best HMM Match : No HMM Matches (HMM E-Value=.)               34   0.11 
SB_33220| Best HMM Match : TP2 (HMM E-Value=1.7)                       33   0.25 
SB_29957| Best HMM Match : Pro_racemase (HMM E-Value=0)                31   0.99 
SB_3090| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.0  
SB_55835| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_23156| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_2767| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.0  
SB_40099| Best HMM Match : GRP (HMM E-Value=1.5)                       28   7.0  
SB_15006| Best HMM Match : Stig1 (HMM E-Value=2)                       28   9.2  

>SB_2622| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 161

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
 Frame = -2

Query: 173 NRKQNEQNKNKSKMNS*HTKLNMKDNTSQINNVHEFY--VHS---KLTIERDC 30
           N   N  N NK+  N+ +   N  DN +  NN H F+  VHS    L++E  C
Sbjct: 97  NNNNNNNNNNKNNNNNNNNNNNNSDNDNDNNNNHHFFDVVHSGVNALSVENRC 149


>SB_33220| Best HMM Match : TP2 (HMM E-Value=1.7)
          Length = 590

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -2

Query: 452 RPSQPDRPRQWSPCSKFRPPSRARAGTASS 363
           +P QPD+ + WSPC   + P +  A T+++
Sbjct: 279 QPRQPDQGQSWSPCMVCKTPGKVAAATSAT 308



 Score = 29.9 bits (64), Expect = 2.3
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 452 RPSQPDRPRQWSPCSKFRPPSRARAGTASS 363
           +P QPD+ + WS C   + P +  A T+++
Sbjct: 171 QPRQPDQGQSWSTCMVCKTPGKVAAATSAT 200


>SB_29957| Best HMM Match : Pro_racemase (HMM E-Value=0)
          Length = 576

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
 Frame = +1

Query: 529 EMMDLQHGSAFMRNAKIQSSTDYSITAGSKICVVTAGVRQREGESRLD---LVQRNTDVL 699
           E+ DL+ G  +     IQ  T    T G  + ++T+G  + +GE+ L     V+ N D L
Sbjct: 294 ELSDLEDGGVYSLEEGIQIRTVEMHTGGEPLRIITSGYPEIKGETILQKRRFVRDNLDYL 353

Query: 700 KQII 711
           ++++
Sbjct: 354 RKML 357


>SB_3090| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = +1

Query: 529 EMMDLQHGSAFMRNAKIQSSTDYSITAGSKICVVTAGVRQREGESRLD---LVQRNTDVL 699
           E+ DL+ G        IQ  T    T G  + ++T+G  + +GE+ L     V+ N D L
Sbjct: 3   ELSDLEDGGVHSLEEGIQIRTVEMHTGGEPLRIITSGYPEIKGETILQKRRFVRDNLDYL 62

Query: 700 KQII 711
           ++++
Sbjct: 63  RKML 66


>SB_55835| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 636

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = -2

Query: 173 NRKQNEQNKNKSKMNS*HTKLNMKDNTSQINNVHEFYVHSKLTIERD 33
           N + N+ N  +  MN+ H  +NM+ N   +        H+ + + RD
Sbjct: 105 NMRHNDMNMRRDNMNTRHNDMNMRHNDMNMRYNDMNTRHNDMNMRRD 151


>SB_23156| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 267

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -2

Query: 428 RQWSPCSKFRPPSRARAGTASSGTPSCGSSR 336
           R  +P S+  P SR+R+ T +  TPS  SSR
Sbjct: 180 RTSTPRSRLTPRSRSRSRTITPSTPSTTSSR 210


>SB_2767| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 61

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -2

Query: 95 TSQINNVHEFYVHSKLTIERDCT 27
          +++I N+ E+Y H +L IE+D T
Sbjct: 28 SNEIRNIREWYPHFRLDIEQDAT 50


>SB_40099| Best HMM Match : GRP (HMM E-Value=1.5)
          Length = 80

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +1

Query: 340 ELPQDGVPEEAVPARAREGGRNLEQGDHCRGRSGWDGR 453
           E   +G  E A  A A  G R  + G +C G  G DGR
Sbjct: 39  EAAAEGAAEMAAEAAAENGSR--DSGGNCGGNCGRDGR 74


>SB_15006| Best HMM Match : Stig1 (HMM E-Value=2)
          Length = 991

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = -2

Query: 200 LPDRSVLIGNRKQ----NEQNKNKSKMNS*HTKLNMKDNTSQINNVHEF 66
           +PDR +L    K     N ++KN +  NS    L  K+NT    N HEF
Sbjct: 87  VPDRLILFDTYKTLYTANRKHKNTTDDNS--DVLQFKENTKAYLNTHEF 133


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,122,947
Number of Sequences: 59808
Number of extensions: 413164
Number of successful extensions: 1240
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1227
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)