Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0377
(747 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49127-1|CAA88944.1| 333|Caenorhabditis elegans Hypothetical pr... 128 5e-30
U15420-1|AAA67063.1| 333|Caenorhabditis elegans lactate dehydro... 128 5e-30
L43563-1|AAC41613.1| 333|Caenorhabditis elegans L-lactate dehyd... 128 5e-30
U97016-6|AAB52355.2| 153|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z78544-4|CAB01762.3| 374|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z93374-9|CAC70078.1| 116|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z93374-8|CAB07555.1| 359|Caenorhabditis elegans Hypothetical pr... 28 6.1
AF273796-1|AAG15144.1| 116|Caenorhabditis elegans nuclear recep... 28 6.1
AC024800-5|AAF60724.1| 966|Caenorhabditis elegans Hypothetical ... 28 6.1
Z54306-5|CAD59141.1| 1012|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z54306-4|CAA91091.1| 1014|Caenorhabditis elegans Hypothetical pr... 28 8.1
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil... 28 8.1
AY314771-1|AAQ84878.1| 1012|Caenorhabditis elegans latrophilin-l... 28 8.1
AY314770-1|AAQ84877.1| 1014|Caenorhabditis elegans latrophilin-l... 28 8.1
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical... 28 8.1
>Z49127-1|CAA88944.1| 333|Caenorhabditis elegans Hypothetical
protein F13D12.2 protein.
Length = 333
Score = 128 bits (308), Expect = 5e-30
Identities = 58/77 (75%), Positives = 67/77 (87%)
Frame = +1
Query: 508 VADKLKGEMMDLQHGSAFMRNAKIQSSTDYSITAGSKICVVTAGVRQREGESRLDLVQRN 687
VADKLKGEMMDLQHG AF R+ +++ TDYSITAGSK+CVVTAG RQREGE+RL LVQRN
Sbjct: 54 VADKLKGEMMDLQHGLAFTRHCTVKADTDYSITAGSKLCVVTAGARQREGETRLSLVQRN 113
Query: 688 TDVLKQIIPQLIKYSPD 738
++ K IIPQL+KYSPD
Sbjct: 114 VEIFKGIIPQLVKYSPD 130
Score = 56.0 bits (129), Expect = 3e-08
Identities = 24/50 (48%), Positives = 37/50 (74%)
Frame = +2
Query: 359 SLKKLFQPVHEKVDETWSKVTIVGVGQVGMAAAFSMLTQNVTNNIALVDM 508
++K++F + V+ + KVT+VGVGQVGMA A+S+L QN+ N + LVD+
Sbjct: 4 TIKEVFAEIAAPVENSHGKVTVVGVGQVGMACAYSILQQNLANELCLVDV 53
>U15420-1|AAA67063.1| 333|Caenorhabditis elegans lactate
dehydrogenase protein.
Length = 333
Score = 128 bits (308), Expect = 5e-30
Identities = 58/77 (75%), Positives = 67/77 (87%)
Frame = +1
Query: 508 VADKLKGEMMDLQHGSAFMRNAKIQSSTDYSITAGSKICVVTAGVRQREGESRLDLVQRN 687
VADKLKGEMMDLQHG AF R+ +++ TDYSITAGSK+CVVTAG RQREGE+RL LVQRN
Sbjct: 54 VADKLKGEMMDLQHGLAFTRHCTVKADTDYSITAGSKLCVVTAGARQREGETRLSLVQRN 113
Query: 688 TDVLKQIIPQLIKYSPD 738
++ K IIPQL+KYSPD
Sbjct: 114 VEIFKGIIPQLVKYSPD 130
Score = 56.0 bits (129), Expect = 3e-08
Identities = 24/50 (48%), Positives = 37/50 (74%)
Frame = +2
Query: 359 SLKKLFQPVHEKVDETWSKVTIVGVGQVGMAAAFSMLTQNVTNNIALVDM 508
++K++F + V+ + KVT+VGVGQVGMA A+S+L QN+ N + LVD+
Sbjct: 4 TIKEVFAEIAAPVENSHGKVTVVGVGQVGMACAYSILQQNLANELCLVDV 53
>L43563-1|AAC41613.1| 333|Caenorhabditis elegans L-lactate
dehydrogenase protein.
Length = 333
Score = 128 bits (308), Expect = 5e-30
Identities = 58/77 (75%), Positives = 67/77 (87%)
Frame = +1
Query: 508 VADKLKGEMMDLQHGSAFMRNAKIQSSTDYSITAGSKICVVTAGVRQREGESRLDLVQRN 687
VADKLKGEMMDLQHG AF R+ +++ TDYSITAGSK+CVVTAG RQREGE+RL LVQRN
Sbjct: 54 VADKLKGEMMDLQHGLAFTRHCTVKADTDYSITAGSKLCVVTAGARQREGETRLSLVQRN 113
Query: 688 TDVLKQIIPQLIKYSPD 738
++ K IIPQL+KYSPD
Sbjct: 114 VEIFKGIIPQLVKYSPD 130
Score = 56.0 bits (129), Expect = 3e-08
Identities = 24/50 (48%), Positives = 37/50 (74%)
Frame = +2
Query: 359 SLKKLFQPVHEKVDETWSKVTIVGVGQVGMAAAFSMLTQNVTNNIALVDM 508
++K++F + V+ + KVT+VGVGQVGMA A+S+L QN+ N + LVD+
Sbjct: 4 TIKEVFAEIAAPVENSHGKVTVVGVGQVGMACAYSILQQNLANELCLVDV 53
>U97016-6|AAB52355.2| 153|Caenorhabditis elegans Hypothetical
protein B0261.6a protein.
Length = 153
Score = 29.9 bits (64), Expect = 2.0
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 2/102 (1%)
Frame = -2
Query: 431 PRQWSPCSKFRPPSRARAGTASSGTPSCGSSRNARWCCLSPSQILFNTVSS*NTLSNMIT 252
PR S S+ R S+ SS S +S ++ F+ SS +++N +
Sbjct: 2 PRDNSSSSRRRRGSKRCPTGMSSNKTSRSTSSSSVTSSSGHGASSFSEDSSVRSVTNSVR 61
Query: 251 LNKSG*S--HFMNSEL*LTLPDRSVLIGNRKQNEQNKNKSKM 132
+S S ++E + PD ++ G+RKQ+ Q +K KM
Sbjct: 62 STRSAGSIMSMASAEASVVAPDLTIYHGDRKQSYQLADKGKM 103
>Z78544-4|CAB01762.3| 374|Caenorhabditis elegans Hypothetical
protein K04G11.5 protein.
Length = 374
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +2
Query: 77 RY*FDLYYPSYLTLCVNC 130
RY DL P+YLTLCV C
Sbjct: 141 RYMTDLCPPAYLTLCVQC 158
>Z93374-9|CAC70078.1| 116|Caenorhabditis elegans Hypothetical
protein C06C6.5b protein.
Length = 116
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 455 LRPSQPDRPRQWSPCSKFRPPSRARAGTASSGTP 354
+ P + R+ P K +PPS + A T+SS TP
Sbjct: 65 MNPEKVQEKRERHPPKKNKPPSISEALTSSSSTP 98
>Z93374-8|CAB07555.1| 359|Caenorhabditis elegans Hypothetical
protein C06C6.5a protein.
Length = 359
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 455 LRPSQPDRPRQWSPCSKFRPPSRARAGTASSGTP 354
+ P + R+ P K +PPS + A T+SS TP
Sbjct: 65 MNPEKVQEKRERHPPKKNKPPSISEALTSSSSTP 98
>AF273796-1|AAG15144.1| 116|Caenorhabditis elegans nuclear receptor
NHR-50 protein.
Length = 116
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 455 LRPSQPDRPRQWSPCSKFRPPSRARAGTASSGTP 354
+ P + R+ P K +PPS + A T+SS TP
Sbjct: 65 MNPEKVQEKRERHPPKKNKPPSISEALTSSSSTP 98
>AC024800-5|AAF60724.1| 966|Caenorhabditis elegans Hypothetical
protein Y49F6A.1 protein.
Length = 966
Score = 28.3 bits (60), Expect = 6.1
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +1
Query: 388 REGGRNLEQGDHCRGRS-GWDGRSFLYADAECYE*HRSSRHVADKLKGEMMDLQHGSAFM 564
++ G ++G+H R + WD R + E R+ +AD LKG +++ H S +
Sbjct: 297 QDRGDRGDRGNHHRDHNEDWDERKVKEVERRLLEEPRALGSIADALKGLIVESVHLSKDV 356
Query: 565 -RNAKIQ 582
RN++I+
Sbjct: 357 NRNSRIK 363
>Z54306-5|CAD59141.1| 1012|Caenorhabditis elegans Hypothetical
protein B0457.1b protein.
Length = 1012
Score = 27.9 bits (59), Expect = 8.1
Identities = 21/64 (32%), Positives = 28/64 (43%)
Frame = -2
Query: 383 RAGTASSGTPSCGSSRNARWCCLSPSQILFNTVSS*NTLSNMITLNKSG*SHFMNSEL*L 204
++GT SS GSS W C Q L +S SN I+ S S ++SE
Sbjct: 196 KSGTTSSAPCPEGSSGKQLWACTEEGQWLTEFPNSAGCESNWISSRNSVLSGVISSEDVS 255
Query: 203 TLPD 192
LP+
Sbjct: 256 GLPE 259
>Z54306-4|CAA91091.1| 1014|Caenorhabditis elegans Hypothetical
protein B0457.1a protein.
Length = 1014
Score = 27.9 bits (59), Expect = 8.1
Identities = 21/64 (32%), Positives = 28/64 (43%)
Frame = -2
Query: 383 RAGTASSGTPSCGSSRNARWCCLSPSQILFNTVSS*NTLSNMITLNKSG*SHFMNSEL*L 204
++GT SS GSS W C Q L +S SN I+ S S ++SE
Sbjct: 198 KSGTTSSAPCPEGSSGKQLWACTEEGQWLTEFPNSAGCESNWISSRNSVLSGVISSEDVS 257
Query: 203 TLPD 192
LP+
Sbjct: 258 GLPE 261
>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
ATPase protein.
Length = 2395
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -3
Query: 487 IRNILRQHRESCGHPNLTDP 428
+ NI+ Q R+ C HPNL +P
Sbjct: 830 VLNIVMQLRKCCNHPNLFEP 849
>AY314771-1|AAQ84878.1| 1012|Caenorhabditis elegans latrophilin-like
protein LAT-1B protein.
Length = 1012
Score = 27.9 bits (59), Expect = 8.1
Identities = 21/64 (32%), Positives = 28/64 (43%)
Frame = -2
Query: 383 RAGTASSGTPSCGSSRNARWCCLSPSQILFNTVSS*NTLSNMITLNKSG*SHFMNSEL*L 204
++GT SS GSS W C Q L +S SN I+ S S ++SE
Sbjct: 196 KSGTTSSAPCPEGSSGKQLWACTEEGQWLTEFPNSAGCESNWISSRNSVLSGVISSEDVS 255
Query: 203 TLPD 192
LP+
Sbjct: 256 GLPE 259
>AY314770-1|AAQ84877.1| 1014|Caenorhabditis elegans latrophilin-like
protein LAT-1A protein.
Length = 1014
Score = 27.9 bits (59), Expect = 8.1
Identities = 21/64 (32%), Positives = 28/64 (43%)
Frame = -2
Query: 383 RAGTASSGTPSCGSSRNARWCCLSPSQILFNTVSS*NTLSNMITLNKSG*SHFMNSEL*L 204
++GT SS GSS W C Q L +S SN I+ S S ++SE
Sbjct: 198 KSGTTSSAPCPEGSSGKQLWACTEEGQWLTEFPNSAGCESNWISSRNSVLSGVISSEDVS 257
Query: 203 TLPD 192
LP+
Sbjct: 258 GLPE 261
>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
protein Y111B2A.22 protein.
Length = 2395
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -3
Query: 487 IRNILRQHRESCGHPNLTDP 428
+ NI+ Q R+ C HPNL +P
Sbjct: 830 VLNIVMQLRKCCNHPNLFEP 849
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,424,765
Number of Sequences: 27780
Number of extensions: 300031
Number of successful extensions: 980
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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