Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0377
         (747 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   5.3  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   7.0  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   9.3  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -2

Query: 173 NRKQNEQNKNKSKMNS*HTKLNMKDNTSQINNVHEFYVH 57
           + KQN   +N +K N    + N   N    NN ++  VH
Sbjct: 502 DNKQNGNRQNDNKRNG--NRQNDNQNNQNDNNRNDNQVH 538


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 302 FEMATNNTNGHCENYHK 352
           F+M+ NNTN +  N +K
Sbjct: 130 FQMSINNTNNNNTNKYK 146


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 497 ERCYS*HSASA*RKLRPSQPDRPRQWSPCSK 405
           ER +  HS    R +R    +RP + + CSK
Sbjct: 154 ERAFE-HSGKLHRHMRIHTGERPHKCTVCSK 183


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,252
Number of Sequences: 438
Number of extensions: 3542
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)