Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0375
         (709 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   2.4  
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    21   9.8  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   9.8  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    21   9.8  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 18/73 (24%), Positives = 34/73 (46%)
 Frame = -2

Query: 396 DFKTSRI*FIAFTSVFYVIYASFQLELLFFSTISATVITR*SSHYDDF*FLTSFLIHCYL 217
           D+ T  + F+     FY  +  F + LLF+  +   +      +Y  + F+  F +H  L
Sbjct: 200 DYFTLHLLFLPCIYYFYSAFIIFTIHLLFYCVLIILLCI----YYFYYAFIL-FTVHLLL 254

Query: 216 IL*EKFLYLYMNL 178
           ++   + Y YM+L
Sbjct: 255 LVCIYYFY-YMHL 266


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 618 HNLKLITDKTICFAAS 665
           H  +  TDK +CF AS
Sbjct: 17  HQTEAKTDKILCFFAS 32


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 587 QPVHGIYSTGVCCAICPANI 528
           +PVH     G CC  CP ++
Sbjct: 96  EPVH---RPGRCCKTCPGDL 112


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 331 ISIRAFVFLYNICYGNYTIKFTL*RFLISYVVFDSLL 221
           ++ R   FLY++      +   L   + SYVV D LL
Sbjct: 139 LAARYIDFLYHVLSNENALDVDLIGNVCSYVVRDKLL 175


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,613
Number of Sequences: 336
Number of extensions: 3880
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18738900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)