Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0375
         (709 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0045 + 12328388-12328419,12328504-12328645,12328862-123290...    30   1.6  
05_01_0502 + 4191443-4191769,4191770-4191892,4194161-4194313,419...    29   3.6  
01_03_0103 - 12567986-12568141,12568307-12568442,12568751-125688...    28   6.3  

>10_07_0045 +
           12328388-12328419,12328504-12328645,12328862-12329054,
           12329224-12329320,12329404-12329528,12329616-12329734,
           12331225-12331298,12331359-12331413,12331450-12331500,
           12331611-12331857,12331940-12332036,12332170-12332244,
           12334286-12334488,12334757-12334905,12334995-12335168,
           12335276-12335401,12335493-12335623,12335743-12335818,
           12335898-12336027,12336115-12336193,12336267-12336465,
           12336591-12336698,12336769-12337025,12337267-12337282
          Length = 984

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -2

Query: 141 VYKNNIDHFSILNNLVCVYLFFSAGTKILE-IIGVRHKVSTNFC 13
           VY+   +HF+ L     VY F++ G    E I+ +R K+ + FC
Sbjct: 66  VYRRQAEHFNQLLRCGSVYDFYNVGFDPTEMIVHLRFKIRSQFC 109


>05_01_0502 +
           4191443-4191769,4191770-4191892,4194161-4194313,
           4194420-4194505,4194648-4194732,4194871-4194990,
           4195066-4195134,4195351-4195506
          Length = 372

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -2

Query: 138 YKNNIDHFSILNNLVCVYLFFSAGTKILEIIGVRHKVSTNF 16
           Y  NI +F+I N LVC Y+FF      L ++ +   VS  F
Sbjct: 59  YLLNI-YFNIFNKLVCTYIFFPQFVNFLLLLDMFFFVSNLF 98


>01_03_0103 - 12567986-12568141,12568307-12568442,12568751-12568824,
            12568932-12569175,12569480-12569766,12570618-12571103,
            12571348-12571459,12571540-12571745,12573071-12573276,
            12573831-12574162,12574284-12574825,12574967-12576308,
            12576386-12576457,12578438-12578505,12579011-12580174
          Length = 1808

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 476  TVCGVSWYSLRLPPGACRYLPDRSHNI 556
            TV   SW +  L  G CR L +RS NI
Sbjct: 1648 TVASSSWIAAGLSSGYCRLLDERSGNI 1674


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,985,313
Number of Sequences: 37544
Number of extensions: 337729
Number of successful extensions: 560
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)