Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0375
         (709 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80837-3|AAB37904.2|  384|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z79639-2|CAB01915.1|  367|Caenorhabditis elegans Hypothetical pr...    29   4.3  
U39994-2|AAB37017.1|  378|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z81028-1|CAB02690.1| 1099|Caenorhabditis elegans Hypothetical pr...    27   9.9  
U58727-5|AAB00585.1| 1106|Caenorhabditis elegans Hypothetical pr...    27   9.9  
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t...    27   9.9  
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t...    27   9.9  
AF045640-7|AAU05589.1|  978|Caenorhabditis elegans Novel channel...    27   9.9  
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel...    27   9.9  
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel...    27   9.9  
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel...    27   9.9  
AF043700-7|AAB97573.2|  165|Caenorhabditis elegans Hypothetical ...    27   9.9  

>U80837-3|AAB37904.2|  384|Caenorhabditis elegans Hypothetical
           protein F07E5.5 protein.
          Length = 384

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -3

Query: 587 QPVHGIYSTGVCCAICPANIGTHL 516
           Q V+G+Y  G CC +C AN  THL
Sbjct: 297 QNVNGVYPDGGCCNVCGAN--THL 318


>Z79639-2|CAB01915.1|  367|Caenorhabditis elegans Hypothetical
           protein F54E4.2 protein.
          Length = 367

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = -1

Query: 355 GLLRHLR-FISIRAFVFLYNICYGNYTIKFTL*RFLISYVVFD-SLLSYI 212
           G+LR +R +I       L+ +  G+Y  +FT   F ++  VFD ++LS +
Sbjct: 252 GILRAIRPYIDGNVVFILFQVFKGSYLARFTFNAFYLTLFVFDRNILSKV 301


>U39994-2|AAB37017.1|  378|Caenorhabditis elegans Hypothetical
           protein C48C5.1 protein.
          Length = 378

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
 Frame = -2

Query: 480 TVGTLTHRLSCSKVRVRKILKECKICAADFKTSRI*FI--AFTSVFYVIYASFQLELLFF 307
           T+  L  R++C KV   + ++  ++   +    RI  I  A  S F++ Y  FQL+ L F
Sbjct: 248 TIVILYARIAC-KVSSNRTIQPGELDITEELQMRINAILCAIVSAFFICYLPFQLQRLLF 306

Query: 306 STISATVITR*SSHYDDF*FLTSFLIHCYLIL 211
                 VI    + Y    F++ FL +   I+
Sbjct: 307 FYFDNEVILTWVNQY--MYFISGFLFYLATII 336


>Z81028-1|CAB02690.1| 1099|Caenorhabditis elegans Hypothetical
           protein B0365.1 protein.
          Length = 1099

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 431 LTRTLEQDKR*VNVPTVCGVSWYSLRLPPGACRYL 535
           +T+ LE D   + +  V G+ W+  RLPP A +++
Sbjct: 855 ITKVLESD---MGIGGVLGLLWFQKRLPPHANKFI 886


>U58727-5|AAB00585.1| 1106|Caenorhabditis elegans Hypothetical
           protein D1005.1 protein.
          Length = 1106

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 431 LTRTLEQDKR*VNVPTVCGVSWYSLRLPPGACRYL 535
           +T+ LE D   + +  V G+ W+  RLPP A +++
Sbjct: 859 ITKVLESD---MGIGGVLGLLWFQKRLPPHANKFI 890


>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1797

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 246 LTSFLIHCYLIL*EKFLYLYMN 181
           L SFL+HCY ++   F +L++N
Sbjct: 131 LLSFLLHCYQLIDNFFPFLHLN 152


>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1831

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 246 LTSFLIHCYLIL*EKFLYLYMN 181
           L SFL+HCY ++   F +L++N
Sbjct: 131 LLSFLLHCYQLIDNFFPFLHLN 152


>AF045640-7|AAU05589.1|  978|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           b protein.
          Length = 978

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 246 LTSFLIHCYLIL*EKFLYLYMN 181
           L SFL+HCY ++   F +L++N
Sbjct: 189 LLSFLLHCYQLIDNFFPFLHLN 210


>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           a protein.
          Length = 1562

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 246 LTSFLIHCYLIL*EKFLYLYMN 181
           L SFL+HCY ++   F +L++N
Sbjct: 189 LLSFLLHCYQLIDNFFPFLHLN 210


>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           c protein.
          Length = 1913

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 246 LTSFLIHCYLIL*EKFLYLYMN 181
           L SFL+HCY ++   F +L++N
Sbjct: 189 LLSFLLHCYQLIDNFFPFLHLN 210


>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           d protein.
          Length = 1861

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 246 LTSFLIHCYLIL*EKFLYLYMN 181
           L SFL+HCY ++   F +L++N
Sbjct: 161 LLSFLLHCYQLIDNFFPFLHLN 182


>AF043700-7|AAB97573.2|  165|Caenorhabditis elegans Hypothetical
           protein K09H9.7 protein.
          Length = 165

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 567 IYAVNGLYQSITKAGIRHNLKLITDKTICFAAS 665
           I A NG+++S+ +A + HN KL   K +   +S
Sbjct: 33  ILAENGIHESVIRALVLHNAKLPIPKCVATESS 65


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,965,465
Number of Sequences: 27780
Number of extensions: 343391
Number of successful extensions: 724
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)