Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0375
         (709 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   3.7  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    22   5.0  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   5.0  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   6.6  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   8.7  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -2

Query: 486 PQTVGTLTHRLSCSKVRVRKILKECKICAADFKTSRI 376
           PQ    L +   C++  +  ILKE KI     K+  +
Sbjct: 475 PQVETILQNACFCARNELMMILKEIKIITDQLKSEEL 511


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 232 QKRRKKLKIVIM*TLSCNYRSRY 300
           ++R K+ KI+   + SCNY + Y
Sbjct: 295 RERSKEPKIISSLSNSCNYSNNY 317


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -3

Query: 569 YSTGVCCA-ICPANIGTHLEVTGGN 498
           YS G   + +CP    THL+V+G N
Sbjct: 372 YSNGQTHSQLCPTPRSTHLKVSGIN 396


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -1

Query: 97  GMCLFIFQCWYENFRDNWST 38
           G+ +  F+ W   FR NW++
Sbjct: 138 GVGVIDFESWRPIFRQNWAS 157


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -2

Query: 564 HRRMLCDLSGKYRHAPGGNRREYQLTPQT 478
           +RRM      K +  PG    + +++PQT
Sbjct: 320 NRRMKWKKENKSKGTPGSGDGDTEISPQT 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,163
Number of Sequences: 438
Number of extensions: 4622
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)