Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0375
         (709 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g32940.1 68417.m04687 vacuolar processing enzyme gamma / gamm...    29   4.0  
At3g22670.1 68416.m02861 pentatricopeptide (PPR) repeat-containi...    28   7.0  
At1g49850.1 68414.m05589 zinc finger (C3HC4-type RING finger) fa...    27   9.2  

>At4g32940.1 68417.m04687 vacuolar processing enzyme gamma /
           gamma-VPE nearly identical to SP|Q39119 Vacuolar
           processing enzyme, gamma-isozyme precursor (EC 3.4.22.-)
           (Gamma-VPE) {Arabidopsis thaliana}
          Length = 494

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = -2

Query: 534 KYRHAPGGNRREYQLTPQTVGTLTHRLSC--SKVRVRKIL 421
           KYR AP G+ R+ +   Q +  ++HRL    S + V KIL
Sbjct: 365 KYRKAPEGSARKTEAQKQVLEAMSHRLHIDNSVILVGKIL 404


>At3g22670.1 68416.m02861 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 562

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +2

Query: 350 KTDVKAMN*ILDVLKSAAHILHSFRIFLT--RTLEQDKR*VNV 472
           KTD  AMN ++D L     I H+  +FL    T++ D R  N+
Sbjct: 236 KTDTIAMNSLMDALVKENSIEHAHEVFLKLFDTIKPDARTFNI 278


>At1g49850.1 68414.m05589 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 250

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -2

Query: 510 NRREYQLTPQTVGTLTHRLSCSKVRVRKILKECKICAADF 391
           N++   LT   +  L HR + S   V+  +++C IC   F
Sbjct: 172 NKKPQGLTQDAINCL-HRQTFSSAEVKSEMRDCSICLESF 210


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,375,126
Number of Sequences: 28952
Number of extensions: 293615
Number of successful extensions: 509
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)