Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0374
         (775 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    23   2.1  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       22   4.7  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    22   6.3  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   6.3  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   6.3  

>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 498 PNHDFLCGYCRLQNTLCPNLV 436
           P   F+C YC  Q T   NL+
Sbjct: 76  PKRQFICKYCNRQFTKSYNLL 96


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 413 WIIKTVKITSKTRSH 369
           W++   K+TS TR+H
Sbjct: 405 WVLLKNKVTSDTRTH 419


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 78  EEYRTKGISYGCYTTF 31
           E+Y+T G  Y C++ F
Sbjct: 222 EKYKTSGSLYTCWSEF 237


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 557  FLVYSLSFSVLCFFFDC*LHRITTFSAVIVGSKI 456
            FL++     V+ FF    +HR  TFS +I  +++
Sbjct: 1287 FLIFFALLMVIQFFAMM-IHRFGTFSQIITKTQL 1319


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 557  FLVYSLSFSVLCFFFDC*LHRITTFSAVIVGSKI 456
            FL++     V+ FF    +HR  TFS +I  +++
Sbjct: 1287 FLIFFALLMVIQFFAMM-IHRFGTFSQIITKTQL 1319


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,501
Number of Sequences: 336
Number of extensions: 4727
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20857569
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)