Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0374
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    31   0.14 
SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces po...    31   0.14 
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    27   2.3  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    27   3.9  
SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S...    27   3.9  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    27   3.9  
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   5.2  
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa...    26   6.9  
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ...    26   6.9  
SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces pombe...    25   9.1  
SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces pombe...    25   9.1  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   9.1  

>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 23/86 (26%), Positives = 43/86 (50%)
 Frame = +2

Query: 500 GVNSQRKSIERKRTESILKNSSLSKQSKHSEGNKGESVQISVDGPEIIELSASTAAVPST 679
           G++ Q K +++  T SIL N++ +       GN+    +   + P    L    AA+P++
Sbjct: 384 GISGQNK-LQQFATISILNNTNATSHL----GNQSVRERAPEESPMTF-LQKKMAALPTS 437

Query: 680 QENRVLLDPTEQGRNSHRMSVIPEAI 757
              R +L PT Q +NS    ++P+ +
Sbjct: 438 SPVRPMLKPTLQLQNSPLSKLVPQEV 463


>SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = +1

Query: 130 FKNVLQASVQKQWDEVKRAMSAFTYFDGLDEVARREGCIVA 252
           F++V QA ++K W  V  A  AF YF+G D+V   +   VA
Sbjct: 71  FEHVFQA-LKKYWSPVFNACCAFHYFEGNDDVYYDDNAQVA 110


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 539 TESILKNSSLS-KQSKHSEGNKGESVQISVDGPEIIELSASTAAVP 673
           T  IL+ SS + K+ + S GN+G S     D P+I+    S   VP
Sbjct: 447 TLGILRPSSAANKERQTSSGNQGSSNNSGNDKPKIVWFKPSDKRVP 492


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
 Frame = +1

Query: 220  EVARREGCIVAK*NPTNRTRLYLETAWVSPILY--ISFYPAGVR*SNPSKWS*LRVLDVI 393
            E  RREG +    NP N   L +   +  P  Y  ++   AGV      K++  +   + 
Sbjct: 1382 EYLRREGLLDVYGNPINLASLTMHLYYTEPSNYAFMNLLKAGVFHKIAEKFATEKFEAMR 1441

Query: 394  FTVFMI-HIYRQTRANKIWTQSILEPTITAEKVVI 495
             TV ++ H++ + R N+ +  ++   T  A+  V+
Sbjct: 1442 DTVVILCHLFGRIRMNEQYVMTLEGSTDLAQSTVV 1476


>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 548

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -3

Query: 605 PLYYPPNVCFASTNWNFLVYSLSFSVLCFFFD 510
           P+ YP     + ++WN +++S+  +VL  F D
Sbjct: 447 PIIYPALFEISKSHWNRVIHSMVCNVLKLFMD 478


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +3

Query: 366 VVTTRLGRDFYSLYDPYIPPDESEQDLDTKYFGAYNNRRESRD 494
           ++    G+D Y      +P DE+E DL  +YF A   +++ ++
Sbjct: 345 IMDENYGKDVYKHGISNVPDDENEDDLQ-RYFTALEMQQDQKE 386


>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 700

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
 Frame = +1

Query: 91  LGHCELLALMKE---DFKNVLQASVQKQWDEVK 180
           LG+C  LA +K+   +  N LQAS+QK W E++
Sbjct: 166 LGNC--LAHLKKGTLNIDNALQASLQKYWKELQ 196


>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
           Swi6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = +2

Query: 551 LKNSSLSKQSKHSEGNKGESVQISVDGPEIIELSASTAAVPSTQENRVL 697
           +++ + SK     E N+ E +QI+     +      +  VP   +NR L
Sbjct: 210 IESDNESKSPSQKESNESEDIQIAETPSNVTPKKKPSPEVPKLPDNREL 258


>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
           Str2 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 283 YLETAWVSPILYISFYP 333
           YL T W+ P+L  +F+P
Sbjct: 199 YLATVWIGPVLAQAFHP 215


>SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 590

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 11/52 (21%), Positives = 26/52 (50%)
 Frame = +1

Query: 115 LMKEDFKNVLQASVQKQWDEVKRAMSAFTYFDGLDEVARREGCIVAK*NPTN 270
           LM   +  + Q ++++  + ++  M  +T   GL+++ R     + +  PTN
Sbjct: 251 LMNSLYITICQDAMRRMNENLEEGMVKYTGIQGLEDILRSRSWNLLRRRPTN 302


>SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -2

Query: 225 DLIEAIKISKRRHCTFDFVPLFLHGSLQYILKIF 124
           DL   +  S  RHC    +P F H  L++I   F
Sbjct: 239 DLFIFLSPSSARHCLCWSLPYFQHYDLRFIASFF 272


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = -2

Query: 324 RNIQNWRHPRRLQVKSRS-VRRISFCHNTTFATGDLIEAIKISKRRHCTFD 175
           RN   +R+    QVK+ S +  I   H  T +  D+I  I I   R C FD
Sbjct: 270 RNKYQYRNFFMAQVKTLSFLAYILRTHPNTLSEKDIIPDIVIKLLRRCPFD 320


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,502,534
Number of Sequences: 5004
Number of extensions: 76548
Number of successful extensions: 249
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)