Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0374
         (775 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13968| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.26 
SB_33530| Best HMM Match : DUF1168 (HMM E-Value=0.19)                  32   0.59 
SB_40366| Best HMM Match : DUF1473 (HMM E-Value=2.5)                   31   0.78 
SB_3340| Best HMM Match : Exonuc_X-T (HMM E-Value=0.0051)              29   3.2  
SB_48164| Best HMM Match : DUF1168 (HMM E-Value=0.19)                  29   3.2  
SB_15511| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_7560| Best HMM Match : Metallothio_PEC (HMM E-Value=1.3)            29   4.2  
SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.5  
SB_58064| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_50904| Best HMM Match : NACHT (HMM E-Value=2.3e-05)                 29   5.5  
SB_42482| Best HMM Match : 7tm_1 (HMM E-Value=0)                       29   5.5  
SB_13526| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_8589| Best HMM Match : DUF164 (HMM E-Value=0.29)                    28   7.3  
SB_3044| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.3  
SB_32283| Best HMM Match : Homeobox (HMM E-Value=4.5e-20)              28   9.6  
SB_42467| Best HMM Match : Borrelia_orfA (HMM E-Value=1.7)             28   9.6  
SB_8672| Best HMM Match : PKD_channel (HMM E-Value=1.4e-38)            28   9.6  

>SB_13968| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 707

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 8/74 (10%)
 Frame = +2

Query: 536 RTESILKNSSLSK-QSKHSEGNKGESVQISVDGPEIIELS-------ASTAAVPSTQENR 691
           RT+S +K SS  K ++ H+ G K  ++Q+S++  +  EL+        ST A+ ++ ++ 
Sbjct: 401 RTQSEIKRSSAIKGKAPHTLGLK--NIQLSINRQQSTELTLPSINDIVSTIALNASSDDM 458

Query: 692 VLLDPTEQGRNSHR 733
           + +DP E  + +HR
Sbjct: 459 LFIDPMETDKKTHR 472


>SB_33530| Best HMM Match : DUF1168 (HMM E-Value=0.19)
          Length = 1026

 Score = 31.9 bits (69), Expect = 0.59
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +2

Query: 527 ERKRTESILKNSSLSKQSKHSEGNKGESVQISVDGPEIIELSASTAAVPSTQE 685
           E+ R +++  + + SK S+H     G S+        II+  +S+A  P T E
Sbjct: 762 EKDRIKAVSSSVTASKTSEHFATKPGSSIDAPTGNKHIIKAVSSSATAPKTSE 814


>SB_40366| Best HMM Match : DUF1473 (HMM E-Value=2.5)
          Length = 489

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 18/69 (26%), Positives = 35/69 (50%)
 Frame = -2

Query: 459 NTLCPNLVRSRLAVYMDHKDCKNHVQDA*SRPLGWIRSSDTGRIERNIQNWRHPRRLQVK 280
           +T+C N+V+S+    +DH+       D   +   W R    GR+ ++IQ++      Q K
Sbjct: 51  HTVCLNVVKSQAERILDHELVDKKSLDREIKNFPWPRELKCGRLPKSIQSYNGSLG-QWK 109

Query: 279 SRSVRRISF 253
           +  +++ SF
Sbjct: 110 AEGLQKFSF 118


>SB_3340| Best HMM Match : Exonuc_X-T (HMM E-Value=0.0051)
          Length = 342

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 339 CQMIESIQVVVTTRLGRDFYSLYDPYIPPDESEQDLDTKYFG 464
           C   E +++   + +  D   LYD ++ PD    D +TKY G
Sbjct: 258 CTTSEGLELTRVSVVEEDCTLLYDTFVKPDRPIIDYNTKYSG 299


>SB_48164| Best HMM Match : DUF1168 (HMM E-Value=0.19)
          Length = 1883

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +2

Query: 536 RTESILKNSSLSKQSKHSEGNKGESVQISVDGPEIIELSASTAAVPSTQE 685
           R +++  + + SK S+H     G S+        II+  +S+A  P T E
Sbjct: 768 RIKAVSSSVTASKTSEHFATKPGSSIDAPTGNKHIIKAVSSSATAPKTSE 817


>SB_15511| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 739

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = -2

Query: 417 YMDHKDCKNHVQDA*SRPLGWIRSSDTGRIERNIQNWRHPRRLQVKSRSVRRISFCHNTT 238
           Y   KD  +H+    +      RSS++  +ERNI    +  R + K+ ++R     HNT 
Sbjct: 5   YKFFKDFYDHLLKGINNLKDMFRSSESEALERNIPYNMYQNRPKEKNNALREKIIMHNTY 64

Query: 237 FAT 229
             T
Sbjct: 65  CTT 67


>SB_7560| Best HMM Match : Metallothio_PEC (HMM E-Value=1.3)
          Length = 350

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = +2

Query: 566 LSKQSKHSEGNKGESVQISVDGPEIIELSASTAAVPSTQENRVLLDPTEQGRNSHRMSVI 745
           LS+ SKHSE  K         G  +  L  STA+  + + N + +  T QG  SH+ + I
Sbjct: 11  LSRPSKHSEPEK--------PGGHLANLERSTASSTTKKWNNLYIASTTQGAGSHQEAKI 62


>SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1789

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +1

Query: 421 RQTRANKIWTQSILEPTITAEKVVIRWSQQSKKKHRTEKDRE 546
           R+ R +K   + + +P+I  +   I+  + SK++HRT  D E
Sbjct: 390 REIRVSKSRKKVVRKPSIKIKDTTIKKDKHSKRRHRTCDDDE 431


>SB_58064| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1027

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = +2

Query: 500 GVNSQRKSIERKRTESILKNSSLSKQSKHSEGNKGESVQISVDGPEIIELSAS 658
           G+       ER+      + S+LS  S HS       +  S+ GPE + LS S
Sbjct: 801 GMQKSAVQYERRPLSCSTRTSTLSSSSSHSSTLNSPVMDKSIIGPEQVPLSLS 853


>SB_50904| Best HMM Match : NACHT (HMM E-Value=2.3e-05)
          Length = 1122

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -3

Query: 239  PSRRATSSRPSK*VNADIARLTSSHCFCTEACNTFLKSSFINANSS 102
            P    T +RP++ +  D+ARL       T  C  +LK+  I ++ S
Sbjct: 1077 PVLETTVARPTRSIYLDMARLWGQTASITRTCRPYLKTRAIISSES 1122


>SB_42482| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 347

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 22/60 (36%), Positives = 29/60 (48%)
 Frame = -3

Query: 563 WNFLVYSLSFSVLCFFFDC*LHRITTFSAVIVGSKILCVQILFALVWRYIWIIKTVKITS 384
           W    Y + FS     +D  L+RI+ F  V +G  +  V I   +   Y  I KTVKITS
Sbjct: 158 WGLYEYHIQFSTCSLIWD--LNRIS-FVIVFIGVFVNSVTITIFVC--YYKIYKTVKITS 212


>SB_13526| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 152

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
 Frame = -2

Query: 348 SSDTGRIERNIQNWRHPRRLQVKSRSVRRI------SFCHNTTF 235
           ++D+G +++N +N  H R   VK   +RR         CHNT +
Sbjct: 27  NTDSGNVDQNSENCTHARTSSVKPSYLRRTRSSDHEKNCHNTPY 70


>SB_8589| Best HMM Match : DUF164 (HMM E-Value=0.29)
          Length = 306

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = +2

Query: 506 NSQRKSIERKRTESILKNSSLSKQSKHSEGNKGESVQ-ISVDGPEIIEL 649
           N + +S+E++  +  L N  L  QSK S+GN  +S+Q +  D  E+ +L
Sbjct: 181 NFRCQSLEKEVQKLRLSNEKLWLQSKTSKGNSKDSLQKLQQDNTELEKL 229


>SB_3044| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1170

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = +2

Query: 506 NSQRKSIERKRTESILKNSSLSKQSKHSEGNKGESVQ-ISVDGPEIIEL 649
           N + +S+E++  +  L N  L  QSK S+GN  +S+Q +  D  E+ +L
Sbjct: 181 NFRCQSLEKEVQKLRLSNEKLWLQSKTSKGNSKDSLQKLQQDNTELEKL 229


>SB_32283| Best HMM Match : Homeobox (HMM E-Value=4.5e-20)
          Length = 398

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 635 RDHRQRSERSPLYYPPNVC 579
           R HR +S+ SP Y PP +C
Sbjct: 100 RSHRSQSDDSPSYVPPVLC 118


>SB_42467| Best HMM Match : Borrelia_orfA (HMM E-Value=1.7)
          Length = 810

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 18/89 (20%), Positives = 40/89 (44%)
 Frame = +2

Query: 497 GGVNSQRKSIERKRTESILKNSSLSKQSKHSEGNKGESVQISVDGPEIIELSASTAAVPS 676
           GG+  +  + ++++ +   ++  L +  K   G K        +  E   L + ++A   
Sbjct: 408 GGILYEFNAPQQRKRDRPTEDFDLGQTQKEVAGGKSRKATSVREASETAPLPSVSSA--- 464

Query: 677 TQENRVLLDPTEQGRNSHRMSVIPEAIVD 763
           TQE    L P+++ R +   + +PE I +
Sbjct: 465 TQEKTPKLKPSKKSRKTTTPTAVPEKIAN 493


>SB_8672| Best HMM Match : PKD_channel (HMM E-Value=1.4e-38)
          Length = 1523

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = +2

Query: 497  GGVNSQRKSIERKRTESILKNSSLSKQSKHSEGNKGESVQISVDGPEIIELS 652
            GG   + +  E +  E    ++SL+  S  SE   G+ +  ++DG E+I+LS
Sbjct: 1384 GGEEEEEEEEEEEEEEEEEDSASLTS-SLESENRGGDVLGHAIDGIEVIDLS 1434


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,331,925
Number of Sequences: 59808
Number of extensions: 584912
Number of successful extensions: 1654
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1654
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)