Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0374
         (775 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ...    31   0.91 
Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical pr...    30   2.1  
AC024791-6|AAF60660.2|  782|Caenorhabditis elegans Human spg (sp...    29   4.9  
AF016445-2|AAC69064.1|  376|Caenorhabditis elegans Serpentine re...    28   8.5  

>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
            protein F55F10.1 protein.
          Length = 4368

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 15/50 (30%), Positives = 31/50 (62%), Gaps = 8/50 (16%)
 Frame = +3

Query: 303  VANFVYFVLSGRCQ-------MIESIQVVVTTRLGRD-FYSLYDPYIPPD 428
            + N  YF+L+GRC+       ++E+++ V+  ++ ++  +SL  PY+P D
Sbjct: 938  LVNHGYFLLAGRCRNEKDDVTVVETLEKVIKRKIDKEALFSLDSPYMPRD 987


>Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical
           protein F07A11.4 protein.
          Length = 1095

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = +2

Query: 632 PEIIELSASTAAVPSTQENRVLLDPTEQGRNSHRMSVIPEAIV 760
           P   +LS ST+ +  T+  R  L+  E+GRNS  M+  P+++V
Sbjct: 319 PAYSQLSTSTSTLLRTRRER--LEREEEGRNSSSMTPQPQSLV 359


>AC024791-6|AAF60660.2|  782|Caenorhabditis elegans Human spg
           (spastic paraplegia)protein 7 protein.
          Length = 782

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 20/56 (35%), Positives = 25/56 (44%)
 Frame = +2

Query: 440 RFGHKVFWSLQ*PQRKS*FGGVNSQRKSIERKRTESILKNSSLSKQSKHSEGNKGE 607
           RF  + F  +Q  Q    F    +  K   RK   +  K SS S   K S+GNKGE
Sbjct: 58  RFEERFFNQVQ--QTIRYFASKPNDLKKFFRKEASTDNKESSSSSDKKDSKGNKGE 111


>AF016445-2|AAC69064.1|  376|Caenorhabditis elegans Serpentine
           receptor, class w protein134 protein.
          Length = 376

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 18/62 (29%), Positives = 35/62 (56%)
 Frame = -3

Query: 554 LVYSLSFSVLCFFFDC*LHRITTFSAVIVGSKILCVQILFALVWRYIWIIKTVKITSKTR 375
           L+Y+ + S L    D  L +++TF+A IV   I C  I+F ++   + ++K ++ T + R
Sbjct: 200 LMYAFTISDLFLLNDGLLLKVSTFTAAIVSHIIPC--IIFPII--TVLLVKELRKTDERR 255

Query: 374 SH 369
            +
Sbjct: 256 KN 257


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,353,488
Number of Sequences: 27780
Number of extensions: 429933
Number of successful extensions: 1400
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1399
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)